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Colour deconvolution specifications

Information


Unique identifier OMICS_25612
Name Colour deconvolution
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 3.0.2
Stability Stable
Requirements
ImageJ
Maintained Yes

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Colour deconvolution citations

 (3)
call_split

Connective tissue growth factor specific monoclonal antibody inhibits growth of malignant mesothelioma in an orthotopic mouse model

2018
Oncotarget
PMCID: 5915087
PMID: 29719620
DOI: 10.18632/oncotarget.24892
call_split See protocol

[…] cal specimens stained by light green were digitized, using the microscope and camera described above. We analyzed the image using the ImageJ software and color deconvolution plugin (http://imagej.net/Colour_Deconvolution) for ImageJ, and Fiji implements staining separation by the method of Ruifrok and Johnston []. Extracted light green-positive area was converted to black (threshold: upper cutoff, […]

call_split

Differential spatial expression of peripheral olfactory neuron derived BACE1 induces olfactory impairment by region specific accumulation of β amyloid oligomer

2017
PMCID: 5596540
PMID: 28796251
DOI: 10.1038/cddis.2017.349
call_split See protocol

[…] he OB from three tissue sections per animal. To quantify the reciprocal intensity, by measuring the intensity per unit area, with ImageJ, using the color deconvolution plug-in (http://wiki.imagej.net/Colour_Deconvolution)., The target unit area of images processed using the color deconvolution tool in imageJ to separate brown from other color in images. The area of brown staining was then quantif […]

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PKM2 promotes tumor angiogenesis by regulating HIF 1α through NF κB activation

2016
Mol Cancer
PMCID: 4704385
PMID: 26739387
DOI: 10.1186/s12943-015-0490-2

[…] est. p < 0.05 or less was considered significant. The quantitative analysis of immunohistology staining was performed with Image J software (National Institute of Health, Bethesda, MD, USA) using the Colour Deconvolution plugin. […]

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Colour deconvolution institution(s)
Department of Pathology, M.D. Anderson Cancer Center, Houston, TX, USA

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