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chevron_left Genome viewers ChIP-seq data visualization Genomic region enrichment analysis Genomic signal distribution Motif comparison chevron_right
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ColoWeb specifications

Information


Unique identifier OMICS_07620
Name ColoWeb
Interface Web user interface
Restrictions to use None
Programming languages Java, Javascript
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Michael C. Ryan <>

Publication for ColoWeb

ColoWeb in publications

 (3)
PMCID: 5389579
PMID: 28082391
DOI: 10.1093/nar/gkw1366

[…] tandem repeat and z-dna motif) downloaded from non-b dna database were used to identify which non-b dna significantly overlaps with the binding sites. two different statistical methods, lola and coloweb, were employed. coloweb is a web based tool that calculates two different statistics for enrichment and lack of enrichment of genomic features using the histogram generated from feature […]

PMCID: 5389698
PMID: 27924004
DOI: 10.1093/nar/gkw1211

[…] were performed to identify the extent of colocalization among orca, methylated cpgs, histone modifications and replication origins. whole-genome co-localization was visualized and quantified using coloweb () and verified with genomatix., detailed medip protocol is described in ., for medip-seq, sonicated genomic dna (6 μg) was used to construct libraries using the kapa hyper prep kit (kapa […]

PMCID: 4862150
PMID: 27168766
DOI: 10.1186/s13072-016-0067-3

[…] genomic dna from u2os and ips cells., colocalization analyses comparing the locations of replication origins with genetic features and chromatin modifications were performed using the web-based coloweb program (http://projects.insilico.us.com/coloweb/) and the genomatix suite (https://www.genomatix.de/). we quantified the abundance of chromatin modifications (dnase-hypersensitive sites, […]


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ColoWeb institution(s)
DNA Replication Group, Laboratory of Molecular Pharmacology, Developmental Therapeutics Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA; In Silico Solutions, Falls Church, VA, USA

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