COLT-Viz statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool COLT-Viz
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Clonal lineage reconstruction chevron_right
Want to access the full stats & trends on this tool?

COLT-Viz specifications

Information


Unique identifier OMICS_23966
Name COLT-Viz
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A list of nodes, or unique antibody sequences.
Input format JSON
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Requirements
JRE
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for COLT-Viz

COLT-Viz citation

library_books

Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children

2017
Nat Commun
PMCID: 5599618
PMID: 28912592
DOI: 10.1038/s41467-017-00645-x

[…] eage structures were generated using COLT (software can be downloaded here: http://www.cs.wright.edu/~keke.chen/software/colt.zip) and validated manually. We implemented a lineage visualization tool, COLT-Viz (He et al., submitted). In short, COLT considers constraints (e.g., isotype and timepoint) along with mutational patterns to build lineage trees. The height of each node is proportional to th […]


Want to access the full list of citations?
COLT-Viz institution(s)
Department of Biomedical engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA; McKetta Department of Chemical Engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA; ImmuDX LLC, Austin, TX, USA; Department of Computer Science and Engineering, Wright State University, Dayton, OH, USA; Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA
COLT-Viz funding source(s)
Supported by NIH grants R00AG040149 and by the Welch Foundation grant F1785, by a Cancer Prevention and Research Institute of Texas (CPRIT) Scholar and a Damon Runyon-Rachleff Innovator; a recipient of the Thrust 2000 210 - George Sawyer Endowed Graduate Fellowship in Engineering.

COLT-Viz reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review COLT-Viz