COLT-Viz statistics

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Associated diseases

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COLT-Viz specifications

Information


Unique identifier OMICS_23966
Name COLT-Viz
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A list of nodes, or unique antibody sequences.
Input format JSON
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Requirements
JRE
Maintained No

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Publication for COLT-Viz

COLT-Viz in publication

PMCID: 5599618
PMID: 28912592
DOI: 10.1038/s41467-017-00645-x

[…] structures were generated using colt (software can be downloaded here: http://www.cs.wright.edu/~keke.chen/software/colt.zip) and validated manually. we implemented a lineage visualization tool, colt-viz (he et al., submitted). in short, colt considers constraints (e.g., isotype and timepoint) along with mutational patterns to build lineage trees. the height of each node is proportional […]


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COLT-Viz institution(s)
Department of Biomedical engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA; McKetta Department of Chemical Engineering, Cockrell School of Engineering, The University of Texas at Austin, Austin, TX, USA; ImmuDX LLC, Austin, TX, USA; Department of Computer Science and Engineering, Wright State University, Dayton, OH, USA; Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, USA
COLT-Viz funding source(s)
Supported by NIH grants R00AG040149 and by the Welch Foundation grant F1785, by a Cancer Prevention and Research Institute of Texas (CPRIT) Scholar and a Damon Runyon-Rachleff Innovator; a recipient of the Thrust 2000 210 - George Sawyer Endowed Graduate Fellowship in Engineering.

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