COMAN specifications

Information


Unique identifier OMICS_18039
Name COMAN
Alternative name Comprehensive Metatranscriptomics Analysis
Interface Web user interface
Input data An NGS Illumina metatranscriptome sequencing files, the metadata file providing the sample information and category that is used for performing DE analysis.
Input format TXT, FASTQ
Output data The output includes high-quality figures, as well as the essential data in tabular format.
Output format PNG, PDF, TSV
License Apache License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Gianni Panagiotou

Publication for Comprehensive Metatranscriptomics Analysis

COMAN citations

 (2)
library_books

Current Knowledge and Computational Techniques for Grapevine Meta Omics Analysis

2018
Front Plant Sci
PMCID: 5767322
PMID: 29375610
DOI: 10.3389/fpls.2017.02241

[…] ch analyzes the structure and function of an active microbial community in a sample. It was developed to analyze large amounts of data produced by sequencing leveraging parallel computing techniques. COMAN (Ni et al., ) is a tool for determining the metatranscriptome through an easy-to-use web interface. The primary purpose of the platform is providing tools for quality control, metatranscripts co […]

library_books

TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms

2017
BMC Genomics
PMCID: 5644092
PMID: 29037173
DOI: 10.1186/s12864-017-4168-6

[…] in detail an analysis pipeline for prokaryotic datasets. SAMSA [] is also a metatranscriptome analysis pipeline which is mostly suited for prokaryotes because of its use of the NCBI RefSeq database. COMAN [] maps metatranscriptome reads to bacterial reference genomes, and MetaTrans [] assigns a taxonomy based on prokaryotic 16S rRNA.Other studies construct pipelines for subparts of the analysis, […]

COMAN institution(s)
Systems Biology & Bioinformatics Group, School of Biological Sciences, The University of Hong Kong, Hong Kong, Hong Kong
COMAN funding source(s)
This work was supported by the Strategic Research Theme of Genomics of the University of Hong Kong.

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