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CopTea

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Gathers many functional enrichment analysis based on combinatorial optimization. CopTea also includes a network-based probabilistic generative model which identifies important gene ontology (GO) terms indirectly linked with the active gene list.

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CopTea classification

CopTea specifications

Unique identifier:
OMICS_21884
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Combinatorial OPTimization based Enrichment Analysis
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
0.4.0
Source code URL:
https://codeload.github.com/wulingyun/CopTea/zip/v0.3-0

Subtools

  • NetGen

CopTea distribution

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CopTea support

Maintainers

  • Ling-Yun Wu <>
  • Ling-Yun Wu <>
  • Duanchen Sun <>

Credits

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Publications

Institution(s)

Institute of Applied Mathematics, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing, China; National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Beijing, China; School of Mathematical Sciences, University of Chinese Academy of Sciences, Beijing, China

Funding source(s)

Supported by the Strategic Priority Research Program of the Chinese Academy of Sciences [grant number XDB13040600]; the National Natural Science Foundation of China [grant numbers 91330114, 11131009, 11631014, 11661141019]; and by the National Natural Science Foundation of China [grant number 91330114].

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