Community phylogenetics (or eco-phylogenetics) combines ecology and evolutionary biology, linking ecological phenomena with the evolutionary processes that generate species and their traits (see Webb et al., 2002). Source text: Pearse et al., 2015.

Desktop app
Bio7 Bio7

Bio7

An integrated development environment for ecological modelling. Bio7 contains…

An integrated development environment for ecological modelling. Bio7 contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on…

Desktop app
pez pez

pez

Allows measurement, modelling and simulation of phylogenetic structure in…

Allows measurement, modelling and simulation of phylogenetic structure in environmental data. pez contains the first implementation of methods, and compiles existing data structures and methods into…

Desktop app
miLineage miLineage

miLineage

Provides knowledge towards understanding the roles of microbes in the…

Provides knowledge towards understanding the roles of microbes in the underlying disease mechanism. miLineage develops a general framework to: (a) perform robust association tests for the microbial…

Desktop app
Web app
OneZoom OneZoom

OneZoom

It is committed to heightening awareness about the diversity of life on earth,…

It is committed to heightening awareness about the diversity of life on earth, its evolutionary history and the threats of extinction. OneZoom allows you to explore the tree of life in a completely…

Web app
Phylogeny Javascript… Phylogeny Javascript Information Visualiser and…

PhyloJIVE Phylogeny Javascript Information Visualiser and Explorer

A web-based application that integrates biodiversity information aggregated…

A web-based application that integrates biodiversity information aggregated from many sources with phylogenetic trees. PhyloJIVE demonstrates that it is possible and useful to assemble interactive…

Desktop app
adephylo adephylo

adephylo

A package for the R software dedicated to the analysis of comparative…

A package for the R software dedicated to the analysis of comparative evolutionary data. Adephylo provides tools for quantifying and describing the phylogenetic structures of biological traits.…

Desktop app
phyloGenerator phyloGenerator

phyloGenerator

An easy way for ecologists to make realistic, tenable phylogenies. With…

An easy way for ecologists to make realistic, tenable phylogenies. With phyloGenerator, you can download real DNA sequence data for your species of interest, and then generate a calibrated phylogeny…

Desktop app
spacodiR spacodiR

spacodiR

A cross-platform package, written for the R environment, for studying…

A cross-platform package, written for the R environment, for studying partitioning of diversity among natural communities in space and time. Complementing and extending existing software, spacodiR…

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