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Eco-phylogenetics software tools | Phylogenomics

Community phylogenetics (or eco-phylogenetics) combines ecology and evolutionary biology, linking ecological phenomena with the evolutionary processes that generate species and their traits (see Webb et al., 2002). Source text: Pearse et al., 2015.

pez
Desktop

pez

Allows measurement, modelling and simulation of phylogenetic structure in…

Allows measurement, modelling and simulation of phylogenetic structure in environmental data. pez contains the first implementation of methods, and compiles existing data structures and methods into…

miLineage
Desktop

miLineage

Provides knowledge towards understanding the roles of microbes in the…

Provides knowledge towards understanding the roles of microbes in the underlying disease mechanism. miLineage develops a general framework to: (a) perform robust association tests for the microbial…

adephylo
Desktop

adephylo

A package for the R software dedicated to the analysis of comparative…

A package for the R software dedicated to the analysis of comparative evolutionary data. Adephylo provides tools for quantifying and describing the phylogenetic structures of biological traits.…

spacodiR
Desktop

spacodiR

A cross-platform package, written for the R environment, for studying…

A cross-platform package, written for the R environment, for studying partitioning of diversity among natural communities in space and time. Complementing and extending existing software, spacodiR…

PhyloJIVE
Web

PhyloJIVE Phylogeny Javascript Information Visualiser and Explorer

A web-based application that integrates biodiversity information aggregated…

A web-based application that integrates biodiversity information aggregated from many sources with phylogenetic trees. PhyloJIVE demonstrates that it is possible and useful to assemble interactive…

OneZoom
Desktop
Web

OneZoom

It is committed to heightening awareness about the diversity of life on earth,…

It is committed to heightening awareness about the diversity of life on earth, its evolutionary history and the threats of extinction. OneZoom allows you to explore the tree of life in a completely…

Bio7
Desktop

Bio7

An integrated development environment for ecological modelling. Bio7 contains…

An integrated development environment for ecological modelling. Bio7 contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on…

phyloGenerator
Desktop

phyloGenerator

An easy way for ecologists to make realistic, tenable phylogenies. With…

An easy way for ecologists to make realistic, tenable phylogenies. With phyloGenerator, you can download real DNA sequence data for your species of interest, and then generate a calibrated phylogeny…

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