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coMOTIF

Considers two motifs jointly and simultaneously determines which sequences contain both motifs, either one or neither of them. coMOTIF can take a single position weight matrice (PWM) and automatically carry out the onemotif analysis as in MEME for a single motif finding. It performed better than a simple scanning procedure for estimating the proportions of sequences containing a common primary motif and containing a less abundant coregulatory motif.

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coMOTIF classification

coMOTIF specifications

Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 3.0
Version:
1.0
Source code URL:
https://www.niehs.nih.gov/research/resources/assets/docs/comotif_v10targz.gz
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

coMOTIF distribution

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Credits

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Publications

Institution(s)

Biostatistics Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA

Funding source(s)

This work was supported by Intramural Research Program of the National Institutes of Health; National Institute of Environmental Health Sciences (ES101765-05).

Link to literature

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