Main logo
tutorial arrow
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.


Considers two motifs jointly and simultaneously determines which sequences contain both motifs, either one or neither of them. coMOTIF can take a single position weight matrice (PWM) and automatically carry out the onemotif analysis as in MEME for a single motif finding. It performed better than a simple scanning procedure for estimating the proportions of sequences containing a common primary motif and containing a less abundant coregulatory motif.

User report

tutorial arrow
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

coMOTIF forum

tutorial arrow
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

coMOTIF classification

coMOTIF specifications

Software type:
Restrictions to use:
GNU General Public License version 3.0
Source code URL:
Command line interface
Operating system:
Computer skills:

coMOTIF distribution


tutorial arrow
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.


tutorial arrow
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship



Biostatistics Branch, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA

Funding source(s)

This work was supported by Intramural Research Program of the National Institutes of Health; National Institute of Environmental Health Sciences (ES101765-05).

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.