The major principles of comparative genomics are straightforward. Common features of two organisms will often be encoded within the DNA that is conserved between the species. More precisely, the DNA sequences encoding the proteins and RNAs responsible for functions that were…
Gramene
Dataset

Gramene

A curated, open-source, integrated data resource for comparative functional…

A curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species. Our goal is to facilitate the study of cross-species comparisons using…

Genomicus
Web

Genomicus

A visualization tool allowing comparative genomics in four different phyla…

A visualization tool allowing comparative genomics in four different phyla (Vertebrate, Fungi, Metazoan and Plants). Genomicus provides access to genomic information from extant species, as well as…

PGDD
Dataset

PGDD Plant Genome Duplication Database

A public database to identify and catalog plant genes in terms of intragenome…

A public database to identify and catalog plant genes in terms of intragenome or cross-genome syntenic relationships.

GreenPhylDB
Dataset

GreenPhylDB

A web resource designed for comparative and functional genomics in plants.…

A web resource designed for comparative and functional genomics in plants. GreenPhylDB contains a catalogue of gene families based on gene predictions of genomes, covering a broad taxonomy of green…

MolliGen
Dataset

MolliGen

A database dedicated to the comparative genomics of bacteria belonging to the…

A database dedicated to the comparative genomics of bacteria belonging to the class Mollicutes.

Comparasite
Dataset

Comparasite

A database for comparative studies of transcriptomes of parasites.

A database for comparative studies of transcriptomes of parasites.

ProPortal
Dataset

ProPortal

A database containing genomic, metagenomic, transcriptomic and field data for…

A database containing genomic, metagenomic, transcriptomic and field data for the marine cyanobacterium Prochlorococcus.

ShiBASE
Dataset

ShiBASE

It focuses on the comparative genomics of Shigella and provides a way to…

It focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format.

PlanMine
Dataset

PlanMine

Aims to provide an easily accessible and minable repository of general…

Aims to provide an easily accessible and minable repository of general planarian sequence data. Our dual mission objective is to first, provide opportunities for comparing and mining planarian…

InsectBase
Dataset

InsectBase

Provides a comprehensive platform for researchers who have interests in…

Provides a comprehensive platform for researchers who have interests in analyzing insect genes. InsectBase contains more than 12 millions of sequences, encompassing the genomes of 138 insects,…

BrucellaBase
Dataset

BrucellaBase

A web-based platform that provides features of a genome database together with…

A web-based platform that provides features of a genome database together with unique analysis tools. We have developed a web version of the multilocus sequence typing (MLST) and phylogenetic…

MyMpn
Dataset

MyMpn

An online resource devoted to studying the human pathogen Mycoplasma…

An online resource devoted to studying the human pathogen Mycoplasma pneumoniae, a minimal bacterium causing lower respiratory tract infections. MyMpn hosts a wealth of omics-scale datasets generated…

BmuG@Sbase
Dataset

BmuG@Sbase

A microbial gene expression and comparative genomic database.

A microbial gene expression and comparative genomic database.

MuGI
Desktop

MuGI Multiple Genome Index

A compressed index of collections of genomes of the same species. MuGI reports…

A compressed index of collections of genomes of the same species. MuGI reports all occurrences of a given pattern, in exact and approximate matching model, against a collection of thousand(s)…

BorreliaBase
Dataset

BorreliaBase

An online database for comparative browsing of borrelia genomes. BorreliaBase…

An online database for comparative browsing of borrelia genomes. BorreliaBase is currently populated with sequences from 35 genomes of eight lyme-borreliosis group borrelia species and 7…

Sinbase
Dataset

Sinbase

A web-based database with comprehensive sesame (Sesamum indicum L.) genomic,…

A web-based database with comprehensive sesame (Sesamum indicum L.) genomic, genetic and comparative genomic information. Sinbase includes sequences of assembled sesame pseudomolecular chromosomes,…

Bolbase
Dataset

Bolbase

A database for the Brassica oleracea genome data and comparative genomics…

A database for the Brassica oleracea genome data and comparative genomics information. The whole genome of B. oleracea is available, including nine fully assembled chromosomes and 1,848 scaffolds,…

CKB
Dataset

CKB Cyanobacterial KnowledgeBase

A free access database that contains the genomic and proteomic information of…

A free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. CKB also contains tools for sequence analysis. The…

ArthropodaCyc
Dataset

ArthropodaCyc

A collection of databases dedicated to the arthropod metabolism reconstruction.…

A collection of databases dedicated to the arthropod metabolism reconstruction. ArthropodaCyc allows researchers to perform reliable metabolism comparisons of fully sequenced arthropods genomes.…

CRRD
Dataset

CRRD Chinchilla Research Resource Database

Provides investigators with easy access to relevant datasets and software tools…

Provides investigators with easy access to relevant datasets and software tools to enhance their research. The Chinchilla Research Resource Database contains a complete catalog of genes for…

PromBase
Dataset

PromBase

Contains various genomics sequence for 913 microbial genomes and structural…

Contains various genomics sequence for 913 microbial genomes and structural features. PromBase can serve as a valuable resource for comparative genomics study and help the experimentalist to rapidly…

PGDBj
Dataset

PGDBj Plant Genome DataBase Japan

Aims to integrate plant genome-related information from databases (DBs) and the…

Aims to integrate plant genome-related information from databases (DBs) and the literature. The PGDBj is comprised of three component DBs and a cross-search engine, which provides a seamless search…

MycoCAP
Dataset

MycoCAP Mycobacterium Comparative Analysis Platform

A comparative analysis platform dedicated to the important genus Mycobacterium.…

A comparative analysis platform dedicated to the important genus Mycobacterium. MycoCAP currently provides information of 2108 genome sequences of at least 55 Mycobacterium spp. A number of intuitive…

MiDAS
Dataset

MiDAS Microbial Database for Activated Sludge

Provides a curated taxonomy for abundant and important microorganisms and…

Provides a curated taxonomy for abundant and important microorganisms and integrates it into a community knowledge web platform about the microbes in activated sludge. The MiDAS taxonomy proposes…

CarrotDB
Web

CarrotDB

A Web-based genomic and transcriptomic database for D. carota. It offers the…

A Web-based genomic and transcriptomic database for D. carota. It offers the tools of Genome Map and Basic Local Alignment Search Tool.

HelmCoP
Dataset

HelmCoP Helminth Control and Prevention

An online resource built by integrating functional, structural and comparative…

An online resource built by integrating functional, structural and comparative genomic data from plant, animal and human helminthes, to enable researchers to develop strategies for drug, vaccine and…

HOMD
Web

HOMD Human Oral Microbiome Database

A body site-specific public database providing the scientific community with…

A body site-specific public database providing the scientific community with comprehensive information on prokaryote species that are present in the human oral cavity. This dynamic database provides…

Bgi-Ris
Dataset

Bgi-Ris

An integrated information resource and comparative analysis workbench for rice…

An integrated information resource and comparative analysis workbench for rice genomes.

HGTree
Dataset

HGTree

Provides genome-wide horizontal gene transfer information for 2472 completely…

Provides genome-wide horizontal gene transfer information for 2472 completely sequenced prokaryotic genomes (156 Archaea and 2316 Bacteria). HGTree defines lateral gene transfer by comparing the gene…

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