Comparative genome analysis software tools and databases

Comparative genomics steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

TranslatorX
Web
Desktop

TranslatorX

Provides an approach to clean nucleotide alignments based on initial GBlocks…

Provides an approach to clean nucleotide alignments based on initial GBlocks cleaning of the corresponding amino acid alignment. TranslatorX is a web application that generates back-translated…

AGA
Web
Desktop

AGA Advanced Genome Aligner

Helps is align an unknown nucleic acid sequence against a (reference) genome.…

Helps is align an unknown nucleic acid sequence against a (reference) genome. AGA is a method developed to align any nucleic acid sequence against any genome for which Coding Sequence feature…

JSpeciesWS
Web

JSpeciesWS JSpecies Web Server

Calculates in silico the extent of identity between two genomes. JSpeciesWS is…

Calculates in silico the extent of identity between two genomes. JSpeciesWS is able to determine overall genome relatedness indices (OGRI). It allows rapid comparisons against the reference database…

transAlign
Desktop

transAlign translated alignments

It aligns the DNA sequences coding for proteins through their amino acid…

It aligns the DNA sequences coding for proteins through their amino acid translation. transAlign provides a list of functionalities for manipulating either the raw sequence data or the aligned…

Most popular analytical software and databases

HAlign
Desktop

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

Circos
Desktop

Circos

Displays large volumes of genomic rearrangement data. Circos is a visualization…

Displays large volumes of genomic rearrangement data. Circos is a visualization tool that applies a circular ideogram layout to display relationships between genomic intervals. The software provides…

MAFFT
Web

MAFFT

Allows alignment of multiple sequences. MAFFT provides a range of different…

Allows alignment of multiple sequences. MAFFT provides a range of different methods such as L-INS-I or FFT-NS-2. It permits to add unaligned sequences into an existing alignment. This tool can…

Curators for Comparative genomics

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