Comparative genome analysis software tools and databases

Comparative genomics steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

ODG
Desktop

ODG Omics Database Generator

Helps researchers to store and query data at genome-scales. ODG simplifies…

Helps researchers to store and query data at genome-scales. ODG simplifies knowledge transfer from prior work on model organisms and related species. This tool requires a database generation,…

blastall
Desktop

blastall

Permits users to run blast searches. blastall permits users to make searching…

Permits users to run blast searches. blastall permits users to make searching combinations to query nucleotide or peptide sequence databases for example. It is able to find similar sequences in a…

hierarchicalSet…
Desktop

hierarchicalSets

Sets analysis and visualization. hierrachicalSets is particularly adapted for…

Sets analysis and visualization. hierrachicalSets is particularly adapted for large structured collections of sets such as pangenomes. It limits the comparisons between sets to branch points of a…

HomBlocks
Desktop

HomBlocks

Constructs multi-gene alignments in a time-consuming way when compared with the…

Constructs multi-gene alignments in a time-consuming way when compared with the conventional method. HomBlocks can automatically recognize locally collinear blocks among organelle genomes and…

Most popular analytical software and databases

HAlign
Desktop

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

EuMicrobedbLite
Dataset

EuMicrobedbLite

A light weight comprehensive genome resource and sequence analysis platform for…

A light weight comprehensive genome resource and sequence analysis platform for oomycete organisms. EuMicrobedbLite is a successor of the VBI Microbial Database (VMD) that was built using the Genome…

AliView
Desktop

AliView

An alignment viewer and editor designed to meet the requirements of…

An alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly…

GenPlay
Desktop

GenPlay

An analyzer and browser for high-throughput data. GenPlay recognizes a wide…

An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations…

Curators for Comparative genomics

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