Comparative genome analysis software tools and databases

Comparative genomics steps

Bioinformatics tools

Databases

Comparative genome analysis software tools and databases

Most Recent Tools

SRD
Desktop

SRD Sequence Relation Drawing program

Supports the graphical visualization of results generated from sequence…

Supports the graphical visualization of results generated from sequence relationship analysis based on undirected graphs, for a wide range of either nucleic acid sequences or peptide sequences. SRD…

Renkan Blast
Web

Renkan Blast

Blasts query sequences on 18S and 28S radiolaria databases. Renkan Blast…

Blasts query sequences on 18S and 28S radiolaria databases. Renkan Blast permits to search a nucleotide database using a nucleotide query, using the NCBI BLAST and blastn command line tool.…

Cyanorak Blast
Web

Cyanorak Blast

Blasts query sequences on Synechococcus and Prochlorococcus strains. Cyanorak…

Blasts query sequences on Synechococcus and Prochlorococcus strains. Cyanorak Blast is a web application that permits to search (i) nucleotide database with nucleotide query sequences, (ii) protein…

kWIP
Desktop

kWIP k-mer Weighted Inner Product

Estimates genetic similarity by using an assembly- and alignment-free method.…

Estimates genetic similarity by using an assembly- and alignment-free method. kWIP combines a probabilistic data structure with the weighted inner product (WIP) to calculate pairwise similarity…

Most Popular Tools

HAlign
Cloud

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

AliView
Desktop

AliView

An alignment viewer and editor designed to meet the requirements of…

An alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly…

GenPlay
Desktop

GenPlay

An analyzer and browser for high-throughput data. GenPlay recognizes a wide…

An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations…

TnT
Library

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

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