Comparative genome analysis software tools and databases

Comparative genomics steps

Bioinformatics tools

Databases

Comparative genome analysis software tools and databases

Most Recent Tools

pPAP
Desktop

pPAP

Predicts the reaction of a plant type III polyketide synthases (PKS). pPAP…

Predicts the reaction of a plant type III polyketide synthases (PKS). pPAP targets PKSs acting on ring-type starter substrates, and classifies their functions into four reaction types. It is based on…

MultiMSOAR
Desktop

MultiMSOAR

Identifies ortholog groups among multiple genomes. MultiMSOAR provides…

Identifies ortholog groups among multiple genomes. MultiMSOAR provides information about gene births, duplications and losses in evolution, which may be of independent biological interest. It is able…

PARIGA
Web

PARIGA

Enables users to perform all-against-all BLAST searches on two sets of…

Enables users to perform all-against-all BLAST searches on two sets of sequences selected by the user. PARIGA allows the user to filter outputs by using several parameters in real-time fashion,…

RecBlast
Desktop
Web

RecBlast Reciprocal Blast

Enables fast and easy discovery of orthologues along and across the…

Enables fast and easy discovery of orthologues along and across the evolutionary tree. RecBlast is capable of running heavy, large-scale and complex Reciprocal Blast comparisons across multiple genes…

Most Popular Tools

HAlign
Cloud

HAlign

A package of multi-platform Java software tools, which aimed at large scale…

A package of multi-platform Java software tools, which aimed at large scale multiple similar DNA/RNA sequence alignment. HAlign employs center star multiple sequence alignment strategy. The input…

AliView
Desktop

AliView

An alignment viewer and editor designed to meet the requirements of…

An alignment viewer and editor designed to meet the requirements of next-generation sequencing era phylogenetic datasets. AliView handles alignments of unlimited size in the formats most commonly…

GenPlay
Desktop

GenPlay

An analyzer and browser for high-throughput data. GenPlay recognizes a wide…

An analyzer and browser for high-throughput data. GenPlay recognizes a wide variety of common genomic data formats from microarray- or sequencing-based platforms and offers a library of operations…

TnT
Library

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

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