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CompariMotif

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Takes two lists of regular expression protein (or DNA) motifs and compares them to each other, identifying which motifs have some degree of overlap. CompariMotif outputs a table of all pairs of matching motifs, along with their degree of similarity (information content) and their relationship to each other.

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CompariMotif versioning

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CompariMotif classification

  • Animals
  • Fungi
  • Plants
  • Protists

CompariMotif specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
3.11
Maintained:
Yes

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CompariMotif forum

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Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

CompariMotif classification

  • Animals
  • Fungi
  • Plants
  • Protists

CompariMotif specifications

Interface:
Web user interface
Programming languages:
Python
Version:
3.11
Maintained:
Yes
Restrictions to use:
Academic or non-commercial use
Computer skills:
Basic
Stability:
Stable

CompariMotif support

Maintainer

  • Denis Shields <>
  • Denis Shields <>

Credits

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Publications

Institution(s)

UCD Complex and Adaptive Systems Laboratory, University College Dublin, Dublin

Link to literature

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