COMPASS protocols

COMPASS specifications


Unique identifier OMICS_18377
Alternative name Coon OMSSA Proteomic Analysis Software Suite
Software type Pipeline/Workflow, Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some Thermo Scientific.
Input format RAW
Output format CSV
Operating system Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.4.1
Stability No
Requirements OMSSA
Maintained No



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Publication for Coon OMSSA Proteomic Analysis Software Suite

COMPASS IN pipeline

PMCID: 3759844
PMID: 23470796
DOI: 10.1016/j.jprot.2013.02.022

[…] to guide beginners., in table 1 we present a feature comparison of software used in recent publications for the quantitation of isobarically tagged ptm experiments. the coon group has developed the compass [32] proteomics analysis suite for omssa, used recently for the quantitation of stem cell proteomes and phosphoproteomes [18]. the marto group introduced multiplierz [33] that provides […]

COMPASS institution(s)
Department of Chemistry, University of Wisconsin, Madison, WI, USA; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA
COMPASS funding source(s)
Supported by the University of Washington’s Proteomics Resource (UWPR95794), the National Institutes of Health (NIH) R01 GM080148 and P01 GM081629, the Genomic Sciences Training Program, NIH 5T32HG002760.

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