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COMPASS specifications


Unique identifier OMICS_18377
Alternative name Coon OMSSA Proteomic Analysis Software Suite
Software type Pipeline/Workflow, Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some Thermo Scientific.
Input format RAW
Output format CSV
Operating system Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.4.1
Stability No
Maintained No



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Publication for Coon OMSSA Proteomic Analysis Software Suite

COMPASS in publications

PMCID: 5626809
PMID: 29034237
DOI: 10.3389/fmed.2017.00159

[…] imac before lc–ms/ms, and both unenriched and enriched peptides were analyzed. the open mass spectrometry search algorithm (omssa) search algorithm was used along with our in-house software suite coon omssa proteomic analysis software suite (compass) (, ). phosphorylation localization was performed with the phospho rs 3.0 algorithm implemented into compass. statistical significance […]

PMCID: 3983381
PMID: 24611583
DOI: 10.1021/pr401278j

[…] experiments in the thermo .raw format are located on the chorus project website ( under the ‘elution order algorithm’ project., thermo .raw files were processed using the coon omssa proteomic analysis software suite (compass) and in-house software. in brief, raw files were converted to the dta file format (dta generator) and were searched using the open mass […]

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COMPASS institution(s)
Department of Chemistry, University of Wisconsin, Madison, WI, USA; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA
COMPASS funding source(s)
Supported by the University of Washington’s Proteomics Resource (UWPR95794), the National Institutes of Health (NIH) R01 GM080148 and P01 GM081629, the Genomic Sciences Training Program, NIH 5T32HG002760.

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