Protocols

COMPASS specifications

Information


Unique identifier OMICS_18377
Name COMPASS
Alternative name Coon OMSSA Proteomic Analysis Software Suite
Software type Pipeline/Workflow, Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some Thermo Scientific.
Input format RAW
Output format CSV
Operating system Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.4.1
Stability No
Requirements
OMSSA
Maintained No

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Publication for Coon OMSSA Proteomic Analysis Software Suite

COMPASS citations

 (2)
library_books

Proteomics of Eosinophil Activation

2017
PMCID: 5626809
PMID: 29034237
DOI: 10.3389/fmed.2017.00159

[…] ing IMAC before LC–MS/MS, and both unenriched and enriched peptides were analyzed. The Open Mass Spectrometry Search Algorithm (OMSSA) search algorithm was used along with our in-house software suite Coon OMSSA Proteomic Analysis Software Suite (COMPASS) (, ). Phosphorylation localization was performed with the Phospho RS 3.0 algorithm implemented into COMPASS. Statistical significance was determi […]

call_split

Intelligent Data Acquisition Blends Targeted and Discovery Methods

2014
J Proteome Res
PMCID: 3983381
PMID: 24611583
DOI: 10.1021/pr401278j
call_split See protocol

[…] Thermo .raw files were processed using the Coon OMSSA Proteomic Analysis Software Suite (COMPASS) and in-house software. In brief, raw files were converted to the dta file format (DTA Generator) and were searched using the Open Mass Spectromet […]

COMPASS institution(s)
Department of Chemistry, University of Wisconsin, Madison, WI, USA; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA
COMPASS funding source(s)
Supported by the University of Washington’s Proteomics Resource (UWPR95794), the National Institutes of Health (NIH) R01 GM080148 and P01 GM081629, the Genomic Sciences Training Program, NIH 5T32HG002760.

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