COMPASS pipeline

COMPASS specifications

Information


Unique identifier OMICS_05640
Name COMPASS
Alternative name SimpleCOMPASS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for COMPASS

COMPASS IN pipelines

 (4)
2017
PMCID: 5607261
PMID: 28931830
DOI: 10.1038/s41598-017-10773-5

[…] v1.8 and spice (simplified presentation of incredibly complex evaluations) v5.142., cell counts were analysed using the combinatorial polyfunctionality analysis of antigen-specific t cell subsets (compass) algorithm as described in40. briefly, compass is a statistical model developed for high-dimensional flow cytometry data analysis that can detect antigen-specific changes across […]

2017
PMCID: 5607261
PMID: 28931830
DOI: 10.1038/s41598-017-10773-5

[…] complex evaluations) v5.142., cell counts were analysed using the combinatorial polyfunctionality analysis of antigen-specific t cell subsets (compass) algorithm as described in40. briefly, compass is a statistical model developed for high-dimensional flow cytometry data analysis that can detect antigen-specific changes across all observable functional t cell subsets, without the need […]

2017
PMCID: 5607261
PMID: 28931830
DOI: 10.1038/s41598-017-10773-5

[…] can detect antigen-specific changes across all observable functional t cell subsets, without the need to limit the analysis to very specific subsets based on expected biological significance. in compass, responses are quantified using posterior probabilities that summarize for each subject and subset the evidence that the corresponding response is ag specific by comparing the proportion […]

2017
PMCID: 5607261
PMID: 28931830
DOI: 10.1038/s41598-017-10773-5

[…] polyfunctionality scores were calculated from posterior responses probabilities, summarizing a subject’s entire t-cell functionality profile into a single number. in this study, we have applied compass to each of the 10 antigens in 2 (cd4+ and cd8+) t cell subsets leading to 20 analyses. each one of the analyses was unbiased and considered all of the 31 possible cytokine functions (defined […]

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