compendiumdb specifications

Information


Unique identifier OMICS_12116
Name compendiumdb
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, R
Database management system MySQL
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.3
Stability Stable
Requirements
limma, methods, RColorBrewer, gplots, Biobase, GEOquery, genefilter, inSilicoDb, RMySQL, GEOmetadb, GSVA, mogene10sttranscriptcluster.db
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Umesh K. ndal

Publication for compendiumdb

compendiumdb institution(s)
Bioinformatics Laboratory, Department of Clinical Epidemiology, Biostatistics and Bioinformatics, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands; Biosystems Data Analysis Group, University of Amsterdam, Amsterdam, Netherlands
compendiumdb funding source(s)
This work was supported by the BioRange program of the Netherlands Bioinformatics Centre (NBIC) as part of the Netherlands Genomics Initiative (NGI).

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