compEpiTools specifications

Unique identifier:
OMICS_15432
Interface:
Command line interface
Input data:
Epigenomics data (ChiP-seq, DNAse-seq, RNA-seq)
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.8.0
Requirements:
methods, topGO, GenomicRanges
Software type:
Package/Module
Restrictions to use:
None
Output data:
Integrative heatmaps, reads counting, signal enrichment, annotation, RNAPII Stalling index, GO / simplify-GO, IncRNAs, Enhancers, Enhancers-TFs
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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compEpiTools distribution

download

compEpiTools support

Documentation

Maintainer

  • Mattia Pelizzola <>

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Publications

Funding source(s)

This work was supported by the European Community’s Seventh Framework (FP7/2007-2013) project RADIANT [grant number 305626]; a grant from the Italian Association for Cancer Research (AIRC); and by the Mary K. Chapman Foundation and NIH Roadmap Epigenomics project [grant number U01ES017166 and 1U01MH105985].

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