compEpiTools specifications

Information


Unique identifier OMICS_15432
Name compEpiTools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Epigenomics data (ChiP-seq, DNAse-seq, RNA-seq)
Output data Integrative heatmaps, reads counting, signal enrichment, annotation, RNAPII Stalling index, GO / simplify-GO, IncRNAs, Enhancers, Enhancers-TFs
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.8.0
Stability Stable
Requirements methods, topGO, GenomicRanges
Maintained Yes

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Documentation


Maintainer


  • person_outline Mattia Pelizzola <>

compEpiTools article

compEpiTools funding source(s)
This work was supported by the European Community’s Seventh Framework (FP7/2007-2013) project RADIANT [grant number 305626]; a grant from the Italian Association for Cancer Research (AIRC); and by the Mary K. Chapman Foundation and NIH Roadmap Epigenomics project [grant number U01ES017166 and 1U01MH105985].

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