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Competing endogenous RNA databases | RNA interference

Competition for microRNA (miRNA) binding between RNA molecules has emerged as a novel mechanism for the regulation of eukaryotic gene expression. Competing endogenous RNA (ceRNA) can act as decoys for miRNA binding, thereby forming a ceRNA network…
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PceRBase
Dataset

PceRBase Plant ceRNA database

Contains potential competing endogenous RNA (ceRNA) target-target, and ceRNA…

Contains potential competing endogenous RNA (ceRNA) target-target, and ceRNA target-mimic pairs from 26 plant species. PceRBase also stores predicted pairing structure between miRNAs and their target…

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starBase
Dataset

starBase

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs,…

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP,…

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lnCeDB
Dataset

lnCeDB

Provides a database of human lncRNAs (from GENCODE 19 version) that can…

Provides a database of human lncRNAs (from GENCODE 19 version) that can potentially act as ceRNAs. In lnCeDB one can not only browse for lncRNA-mRNA pairs having common targeting miRNAs, but also…

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ceRDB
Dataset

ceRDB competing endogenous RNA DataBase

Lists potential miRNA response elements (MRE) containing genes that can act in…

Lists potential miRNA response elements (MRE) containing genes that can act in a sponge like fashion (absorbing and releasing miRNA based on the level of the transcript) for a given mRNA based on a…

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