Complex heatmaps protocols

Complex heatmaps specifications

Information


Unique identifier OMICS_12421
Name Complex heatmaps
Alternative name ComplexHeatmap
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.11.4
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Matthias Schlesner <>

Publication for Complex heatmaps

Complex heatmaps IN pipelines

 (2)
2017
PMCID: 5438707
PMID: 28423671
DOI: 10.18632/oncotarget.15993

[…] samples compared to normal samples (supplementary figure 7)., we used log2 transformed expected counts data of degs for clustering using ward's distance measure for hierarchical clustering using the complexheatmap package. we observed two major clusters, but these clusters are not as sharply distinguishable as dna methylation clusters (supplementary figure 8). we also did enrichment analysis […]

2017
PMCID: 5537386
PMID: 28795085
DOI: 10.1016/j.dib.2017.07.018

[…] factor overlap (fig. 2). we implemented a heatmap for these genes (fig. 3) and subsets of top 10 up- and top 10 downregulated genes (fig. 4) using the function from the r/bioconductor package complexheatmap [9]. intensities are row-normalized between 0 and 1 (fig. 3, fig. 4). fig. 4 additionally includes color-coded fold changes. we used the r/bioconductor package arrayqualitymetrics [10] […]

Complex heatmaps institution(s)
Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Heidelberg Center for Personalized Oncology (DKFZ-HIPO), German Cancer Research Center (DKFZ), Heidelberg, Germany; Department for Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant, Heidelberg University, Heidelberg, Germany
Complex heatmaps funding source(s)
This work was supported by the German Cancer Research Center-Heidelberg Center for Personalized Oncology (DKFZ-HIPO) and the BMBF-funded de.NBI HD-HuB network (#031A537A, #031A537C).

Complex heatmaps reviews

 (2)
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Gyan Prakash Mishra

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Desktop
I like this tool very much, gives beautiful and easy interpretable heatmap, you have got all the controls over this tool and can tweak everything in this tool.

yang ou

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Desktop
good