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Complex Portal specifications


Unique identifier OMICS_06000
Name Complex Portal
Alternative name ComplexPortal
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Content license Other
Maintained Yes


  • person_outline Birgit Meldal

Publications for Complex Portal

Complex Portal citations


JAMI: a Java library for molecular interactions and data interoperability

BMC Bioinformatics
PMCID: 5896107
PMID: 29642846
DOI: 10.1186/s12859-018-2119-0

[…] MS, MK, AS, JS, JH and YY were funded by BBSRC MIDAS grant (BB/L024179/1), this grant provided the funds for the design of JAMI and its implementation by the IntAct, Complex Portal and InterMine data resources. CC and JR were funded by the Wellcome Trust [103,139, 063412, 203,149] for the design of the ComplexViewer. […]


Expression Atlas: gene and protein expression across multiple studies and organisms

Nucleic Acids Res
PMCID: 5753389
PMID: 29165655
DOI: 10.1093/nar/gkx1158

[…] nomes, Gramene (), Ensembl Plants (), Reactome () and Plant Reactome (), via Javascript-based widgets. Since the last update, the baseline expression widget is also available through WormBase (), the Complex Portal () and the Target Validation Platform by Open Targets (). The widgets are easily accessible ( and can be integrated in any third-party site, provide […]


Genome Informatics 2016

Genome Biol
PMCID: 5240446
PMID: 28093077
DOI: 10.1186/s13059-016-1135-5

[…] y of Edinburgh) presented Shinyngs (, an R package for generating plots from RNA-seq data. Birgit Meldal (European Bioinformatics Institute, UK) described the Complex Portal (, a tool for analyzing and visualizing protein complexes.A few speakers presented on curating data from the literature. Alex Bateman (European Bio […]


Building bridges between cellular and molecular structural biology

PMCID: 5524535
PMID: 28682240
DOI: 10.7554/eLife.25835.008

[…] (UBERON; ), imaging modality and sample preparation from Fbbi (), Foundational Model of Anatomy (FMA) and Cell Ontology (CL; ). It may also include identifiers from resources such as UniProt and the Complex Portal, which in turn contain cross-reference information to other useful standardised vocabularies and common terminology identifiers, such as the OMIM and KEGG () pathways. This cross-refere […]


Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane*

PMCID: 4858940
PMID: 26889046
DOI: 10.1074/mcp.M115.053603

[…] ist was imported into Cytoscape to retrieve interaction data for building an initial network. The interaction data were downloaded from databases of the interactome browser mentha (1012 records), the complex portal IntAct (584 records), the Agile Protein Interaction DataAnalyzer (APID) (524 records), the Database of Interacting Proteins (DIP) (456 records), the automatic molecular interaction pred […]


Shared resources, shared costs—leveraging biocuration resources

PMCID: 4360620
PMID: 25776020
DOI: 10.1093/database/bav009

[…] ce to enable the curation of reference sets of protein complexes. This involves different, but overlapping, curation teams who are collaborating to provide a single centrally maintained resource, the Complex Portal, which makes protein complexes available to be imported into, or cross-referenced from, other data resources (). Figure 2. Similarly, the UniProt-GOA’s annotation tool, Protein2GO (), i […]

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Complex Portal institution(s)
European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, UK; Department of Biochemistry and National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice, Brno-Bohunice, Czech Republic; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA; Chongqing Key Laboratory on Big Data for Bio Intelligence, Chongqing University of Posts and Telecommunications, Chongqing, China; Novartis Institutes for BioMedical Research (NIBR), Basel, Switzerland; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Life Omics, Beijing, China
Complex Portal funding source(s)
Supported by the European Molecular Biology Laboratory Core Funding; Elixir-CZ; OpenTargets and the China Scholarship Council (201708500036).

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