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CRAC | An integrated approach to the analysis of RNA-seq reads

An RNA-Seq mapping software tool that include the discovery of transcriptomic and genomic variants like splice junction, chimeric junction, SNVs, Indels in a single analysis step using a built-in error detection method enabling high precision and sensitivity. CRAC is not a pipeline, but a single program that can replace a combination of Bowtie, SAMtools, and TopHat/TopHat-fusion, and can be viewed as an effort to simplify NGS analysis.

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CRAC forum

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CRAC classification

CRAC specifications

Unique identifier:
OMICS_01240
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Stability:
Stable
Name:
Complex Reads Analysis & Classification
Interface:
Command line interface
Biological technology:
Illumina, Life Technologies, Roche
Programming languages:
C++
Version:
2.0
Maintained:
Yes

CRAC distribution

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CRAC classification

CRAC specifications

Unique identifier:
OMICS_01240
Interface:
Web user interface
Biological technology:
Illumina, Life Technologies, Roche
Computer skills:
Basic
Stability:
Stable
Name:
Complex Reads Analysis & Classification
Restrictions to use:
None
Programming languages:
C++
Version:
2.0
Maintained:
Yes

CRAC support

Maintainer

  • CRAC <>
  • CRAC <>

Additional information

A free trial is available on the site.

Credits

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Publications

Institution(s)

Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM), UMR 5506, CNRS and Université de Montpellier 2, Montpellier, France

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