Composition Profiler pipeline

Composition Profiler specifications

Information


Unique identifier OMICS_25832
Name Composition Profiler
Interface Web user interface
Restrictions to use None
Input data Some protein sequences.
Input format FASTA
Programming languages C, C++, Ruby
License MIT License
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Stefano Lordi <>
  • person_outline Vladimir Vacic <>
  • person_outline Vladimir Uversky <>
  • person_outline Keith Dunker <>

Additional information


http://www.cprofiler.org/cgi-bin/profiler.cgi http://www.cprofiler.org/help.html

Information


Unique identifier OMICS_25832
Name Composition Profiler
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some protein sequences.
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages C, C++, Ruby
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Requirements GhostScript, ImageMagick, gnuplot
Maintained Yes

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Maintainers


  • person_outline Stefano Lordi <>
  • person_outline Vladimir Vacic <>
  • person_outline Vladimir Uversky <>
  • person_outline Keith Dunker <>

Additional information


http://www.cprofiler.org/cgi-bin/profiler.cgi http://www.cprofiler.org/help.html

Publication for Composition Profiler

Composition Profiler IN pipeline

2012
PMCID: 3274520
PMID: 22347381
DOI: 10.1371/journal.pone.0030534

[…] region of the ns1-2 protein with the ordered c-terminal region of ns1-2 showing marked conservation (fig. 3)., analysis of the amino acid sequence composition of the mnv-1 ns1-2 protein using the composition profiler server [44] with the swiss-prot51 database as a reference sample was used to determine the prevalence of order promoting or disorder promoting amino acids (fig. 4). analysis […]

Composition Profiler institution(s)
Department of Computer Science and Engineering, University of California, Riverside, CA, USA; Center for Computational Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA; Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, Russia
Composition Profiler funding source(s)
Supported in part by NSF CAREER IIS-0447773, and NSF DBI-0321756.

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