Comprehensive Microbial Resource statistics
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Protocols
Comprehensive Microbial Resource specifications
Information
| Unique identifier | OMICS_20989 |
|---|---|
| Name | Comprehensive Microbial Resource |
| Restrictions to use | None |
| Database management system | MySQL |
| Community driven | No |
| Data access | File download, Browse |
| User data submission | Not allowed |
| Maintained | No |
Maintainers
Publications for Comprehensive Microbial Resource
The comprehensive microbial resource
The Comprehensive Microbial Resource.
Comprehensive Microbial Resource citations
(44)Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history
[…] oundings regions) and detection of putative operons. The clustering of regulated genes into functional groups was performed using the Bioprocess classification in MicroScope [], which is based on the Comprehensive Microbial Resource (CMR, http://cmr.jcvi.org) []. […]
Comparative Genomic Analysis Reveals Habitat Specific Genes and Regulatory Hubs within the Genus Novosphingobium
[…] enes in the orthologs was identified using the Database of Essential Genes (DEG) version 13.3 (). The genome completeness was estimated by analyzing the presence of 107 essential copy genes using the Comprehensive Microbial Resource as a database, where 107 hidden Markov models (HMMs) of essential copy genes were analyzed in all of the Novosphingobium strains (). […]
A novel small RNA CoaR regulates coenzyme A biosynthesis and tolerance of Synechocystis sp. PCC6803 to 1 butanol possibly via promoter directed transcriptional silencing
[…] coverer software (Version 1.2.0.208) (Thermo Scientific) with default parameters to generating peak list. Genome sequence and annotation information of Synechocystis were downloaded from NCBI and the Comprehensive Microbial Resource (CMR) of TIGR (http://www.tigr.org/CMR) []. Proteins with 1.2-fold change between the CoaR(+) strain and control WT samples and p-value of statistical evaluation <0.05 […]
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India
[…] ] with the bacterial codon table (gyrA: reading frame 1, parC: reading frame 2). To remove reads from untargeted genera, all sequences annotated with gene symbol gyrA or parC were downloaded from the Comprehensive Microbial Resource (CMR) [] and matched to all reads using BLASTn []. Only reads with their best hit to Escherichia or Shigella and with E-values less than 1 × 10−100 were used in this s […]
Comparative analyses of proteins from Haemophilus influenzae biofilm and planktonic populations using metabolic labeling and mass spectrometry
[…] e differentially expressed proteins, a fold-change threshold was not applied to the data. Predicted protein roles were determined using the role identification tool from the J. Craig Venter Institute Comprehensive Microbial Resource website (http://cmr.jcvi.org/cgi-bin/CMR/CmrHomePage.cgi) []. In a few cases this search generated a predicted protein role as “unknown”. These proteins were further i […]
Abundant and Diverse Clustered Regularly Interspaced Short Palindromic Repeat Spacers in Clostridium difficile Strains and Prophages Target Multiple Phage Types within This Pathogen
[…] 2 (CD2975), cas1 (CD2976), cas4 (CD2977), cas3 (CD2978), cas5 (CD2979), cas7 (or cst2) (CD2980), cas8b (or cst1) (CD2981), and cas6 (CD2982), as assigned by the Genome Properties Report from the JCVI Comprehensive Microbial Resource. These genes are near to the largest of the CD630 CRISPR arrays, NC_009089_17, which contains 19 spacers. The second set of predicted cas genes is distinct from the de […]
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