Companion specifications

Unique identifier:
OMICS_11698
Interface:
Web user interface
Input data:
Scaffold sequences or a reference (from our set of 62 species)
Output data:
Annotation results and product annotations
Computer skills:
Basic
Maintained:
Yes
Name:
COMprehensive Parasite ANnotatION
Restrictions to use:
None
Input format:
FASTA, EMBL, GenBank
Output format:
GFF3 format for gene model and GAF format for GO associations
Stability:
Stable

Companion specifications

Unique identifier:
OMICS_11698
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA, EMBL, GenBank
Output format:
GFF3 format for gene model and GAF format for GO associations
Computer skills:
Advanced
Requirements:
Nextflow
Name:
COMprehensive Parasite ANnotatION
Interface:
Command line interface
Input data:
Scaffold sequences or a reference (from our set of 62 species)
Output data:
Annotation results and product annotations
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes

versioning

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Companion distribution

download

Companion support

Maintainer

  • Sascha Steinbiss <>
  • Sascha Steinbiss <>

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Credits

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Publications

Institution(s)

Parasite Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK; Institute of Integrative Biology, University of Liverpool, Liverpool, UK; Department of Biology, University of Pennsylvania, Philadelphia, PA, USA; Parasite Genomics, Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK

Funding source(s)

Wellcome Trust (WT099198MA and WT098051)

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