CORA specifications
Information
| Unique identifier | OMICS_14266 |
|---|---|
| Name | CORA |
| Alternative name | COmpressive Readmapping Accelerator |
| Software type | Framework/Library |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A sequencing read data set and an off-the-shelf read-mapper. |
| Input format | FASTQ |
| Output data | A high-resolution homology table is created for the reference sequence. |
| Output format | SAM |
| Operating system | Unix/Linux |
| Programming languages | C++ |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.1.5 |
| Stability | Beta |
| Maintained | Yes |
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Documentation
- Documentation: https://github.com/denizy/cora/blob/master/manual.txt
Maintainer
- person_outline Bonnie Berger <>
CORA article
library_books
Compressive mapping for next-generation sequencing.
2016 Nat Biotechnol
PMID: 27054987
DOI: 10.1038/nbt.3511
CORA institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA
CORA funding source(s)
This work was supported by the US National Institutes of Health GM108348, the Howard Hughes Medical Institute, IBM and the Fannie and John Hertz Foundation.
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