CORA specifications

Unique identifier:
OMICS_14266
Software type:
Framework/Library
Restrictions to use:
None
Input format:
FASTQ
Output format:
SAM
Programming languages:
C++
Computer skills:
Advanced
Stability:
Beta
Name:
COmpressive Readmapping Accelerator
Interface:
Command line interface
Input data:
A sequencing read data set and an off-the-shelf read-mapper.
Output data:
A high-resolution homology table is created for the reference sequence.
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
1.1.5
Maintained:
Yes

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CORA distribution

download

CORA support

Documentation

Maintainer

  • Bonnie Berger <>

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Publications

Institution(s)

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA

Funding source(s)

This work was supported by the US National Institutes of Health GM108348, the Howard Hughes Medical Institute, IBM and the Fannie and John Hertz Foundation.

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