CORA specifications
- Unique identifier:
- OMICS_14266
- Software type:
- Framework/Library
- Restrictions to use:
- None
- Input format:
- FASTQ
- Output format:
- SAM
- Programming languages:
- C++
- Computer skills:
- Advanced
- Stability:
- Beta
- Name:
- COmpressive Readmapping Accelerator
- Interface:
- Command line interface
- Input data:
- A sequencing read data set and an off-the-shelf read-mapper.
- Output data:
- A high-resolution homology table is created for the reference sequence.
- Operating system:
- Unix/Linux
- License:
- GNU General Public License version 2.0
- Version:
- 1.1.5
- Maintained:
- Yes
versioning
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free
to upload your code and get a DOI
No versioning.
CORA distribution
download
CORA support
Documentation
- Documentation: https://github.com/denizy/cora/blob/master/manual.txt
Maintainer
- Bonnie Berger <>
forum
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free
to ask question and share your advices
No open topic.
Credits
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free
to badge your contributorship
Publications
-
(Yorukoglu et al., 2016)
Compressive mapping for next-generation sequencing.
Nat Biotechnol.
PMID: 27054987 DOI: 10.1038/nbt.3511
Institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA
Funding source(s)
This work was supported by the US National Institutes of Health GM108348, the Howard Hughes Medical Institute, IBM and the Fannie and John Hertz Foundation.
User review
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free
to join and share with the community
0 user reviews
0 user reviews
No review has been posted.
