CORA specifications
- Unique identifier:
- OMICS_14266
- Software type:
- Framework/Library
- Restrictions to use:
- None
- Input format:
- FASTQ
- Output format:
- SAM
- Programming languages:
- C++
- Computer skills:
- Advanced
- Stability:
- Beta
- Name:
- COmpressive Readmapping Accelerator
- Interface:
- Command line interface
- Input data:
- A sequencing read data set and an off-the-shelf read-mapper.
- Output data:
- A high-resolution homology table is created for the reference sequence.
- Operating system:
- Unix/Linux
- License:
- GNU General Public License version 2.0
- Version:
- 1.1.5
- Maintained:
- Yes
versioning

No versioning.
CORA distribution
download
CORA support
Documentation
- Documentation: https://github.com/denizy/cora/blob/master/manual.txt
Maintainer
- Bonnie Berger <>
forum

No open topic.
Credits

Publications
-
(Yorukoglu et al., 2016)
Compressive mapping for next-generation sequencing.
Nat Biotechnol.
PMID: 27054987 DOI: 10.1038/nbt.3511
Institution(s)
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA
Funding source(s)
This work was supported by the US National Institutes of Health GM108348, the Howard Hughes Medical Institute, IBM and the Fannie and John Hertz Foundation.
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