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Computational miRNA identification C-mii


A software tool specially designed and developed for identifying plant microRNAs and their targets. C-mii provides following distinguished features. First, it comes with graphical user interfaces of well-defined pipelines for both miRNA and target identifications with reliable results. Second, it provides a set of filters allowing users to reduce the number of results corresponding to the recently proposed constraints in plant miRNA and target biogenesis. Third, it extends the standard computational steps of miRNA target identification with miRNA-target folding module and GO annotation. Fourth, it supplies the bird eye views of the identification results with info-graphics and grouping information. Fifth, it provides helper functions for database update and auto-recovery to ease system usage and maintenance. Finally, it supports the multi-project and multi-thread management to improve the computational speed.

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C-mii classification

  • Plants

C-mii specifications

Software type:
Restrictions to use:
GNU General Public License version 2.0
Command line interface
Operating system:
Unix/Linux, Windows
Computer skills:

C-mii distribution


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Information Systems Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), Phaholyothin Road, Klong 1, Klong Luang, Pathumthani, Thailand

Link to literature

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