Main logo
tutorial arrow
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Computational Platform for analysis of Small RNA deep Sequencing data CPSS

Alternative name: CPSS1 | CPSS2

Provides a comprehensive integrated pipeline for analyzing small RNA deep sequencing data. CPSS delivers analysis report from ncRNA quantification to miRNA target prediction and annotation of single and multiple datasets. The webserver supports more than 40 species. Each detailed result pages include a search function to find specific terms or values. For Gene Ontology (GO), pathway and protein domain analysis, users can optimize parameters and rerun analysis at each detailed result page.

User report

tutorial arrow
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

CPSS forum

tutorial arrow
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

CPSS classification

  • Animals
  • Plants

CPSS specifications

Web user interface
Input data:
A sample which maximum size is 50MB.
Programming languages:
Perl, PHP, R
Computer skills:
Restrictions to use:
Input format:
Database management system:

CPSS distribution

CPSS support


  • Qinghua Shi <>
  • Yuanwei Zhang <>

Additional information

Version 1:


tutorial arrow
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship



Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, China; School of Information Science and Technology, University of Science and Technology of China, Hefei, China

Funding source(s)

Supported by the National Key Research and Developmental Program of China (2016YFC1000605); the National Basic Research Program of China (2014CB943101); the National Natural Science Foundation of China (31371519, 31501202, 31301227, 31501199, 31571555 and 61571414); the Natural Science Foundation of China - Israel Science Foundation (313111245-1183/14); Major Program of Development Foundation of Hefei Centre for Physical Science and Technology (2014FXZY003); and the Fundamental Research Funds for the Central Universities (WK2070000053 and WK2340000069).

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.