Computel statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Computel
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Tool usage distribution map

This map represents all the scientific publications referring to Computel per scientific context
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Associated diseases

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Protocols

Computel specifications

Information


Unique identifier OMICS_12432
Name Computel
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Computel takes whole-genome NGS short-reads as input.
Operating system Unix/Linux, Windows
Programming languages R
Computer skills Advanced
Version 0.2
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Arsen Arakelyan

Publication for Computel

Computel citations

 (2)
call_split

The age of heterozygous telomerase mutant parents influences the adult phenotype of their offspring irrespective of genotype in zebrafish

2018
Wellcome Open Res
PMCID: 5840683
PMID: 29568807
DOI: 10.21956/wellcomeopenres.13568.r26482
call_split See protocol

[…] used to make Illumina libraries which were sequenced on four lanes of HiSeq X in 151 bp paired-end mode. Sequence data were deposited in ENA under accession ERP016250. FASTQ files were analysed using Computel (v0.3, options: -proc 4 -nchr 25 -lgenome 1371719383 -pattern TTAGGG). FASTQ files were also aligned to the Zv9 reference genome using BWA (v0.7.15, options: mem -t 14 -p -Y -K 100000000) an […]

library_books

Integration of Telomere Length Dynamics into Systems Biology Framework: A Review

2016
PMCID: 4912229
PMID: 27346946
DOI: 10.4137/GRSB.S39836

[…] aled that mutations in ATRX gene associated with chromatin remodeling, but not TERT are linked to increased telomere length, where the latter was measured with TelSeq.Another set of studies have used Computel for measurement of telomere length from the available NGS data. A quantitative trait association study performed on whole genomes of 168 South Asians has revealed ADARB2 gene, with SNPs signi […]


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Computel institution(s)
Group of Bioinformatics of the Institute of Molecular Biology of the National Academy of Sciences of the Republic of Armenia, Yerevan, Armenia

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