- Unique identifier:
- Command line interface
- Operating system:
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- Programming languages:
- C++, Perl
- Source code URL:
- Documentation: https://code.google.com/archive/p/comrad/wikis
- Andrew McPherson <>
I WANT to run one of your software Comrad for the fusion detection.
In the config file (config.txt), i am setting the files path.
I could not found the following files.
# These files are provided in the downloadable dataset from the following url:
ab_parts_filename = (dataset_dir)/abParts.txt
ab_parts_regions = (dataset_dir)/abParts.regions
repeat_regions = (dataset_dir)/repeats.txt
region_filter = (dataset_dir)/region_filter.txt
These files are not present at the given link. From where I can download these file now ???
PLease help me.
(McPherson et al., 2011)
Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; BC Cancer Agency, Vancouver, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada
Supported by the Natural Sciences and Engineering Research Council (NSERC), the Michael Smith Foundation for Health Research (MSFHR), the British Columbia Cancer Research Centre (BCCRC), and the Canadian Institutes of Health Research (CIHR) Bioinformatics training program. Additional funding was provided by the Bioinformatics for Combating Infectious Diseases (BCID) project funded by the Simon Fraser University (SFU) Community Trust Endowment Fund (CTEF).
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