ConBind specifications

Information


Unique identifier OMICS_10969
Name ConBind
Interface Web user interface, Application programming interface
Restrictions to use Academic or non-commercial use
Input data The user needs to provide the following data: (i) the chromosomal coordinates or DNA sequence of the region of interest, (ii) a name for this region, (iii) the strand information, (iv) the genome build, (v) the TF binding motifs of interest and (vi) the species that will be compared.
Output data The output consists of MSAs with highlighted TFBSs, accessible online for consultation or downloadable in FASTA, JALVIEW, MSF, RTF or XML format for further processing.
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for ConBind

ConBind institution(s)
Centre for Integrative Bioinformatics VU, VU University Amsterdam, Amsterdam, Netherlands; Department of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands; Department of Haematology, Wellcome Trust-MRC Cambridge Stem Cell Institute & Cambridge Institute for Medical Research, Cambridge University, Cambridge, UK; Klinik für Hämatologie, Universitätsklinik Essen, Germany; Computational Cancer Biology Group, Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, Netherlands; ENPICOM, Eindhoven, Netherlands
ConBind funding source(s)
Bloodwise; Wellcome Trust; Cancer Research UK; Biotechnology and Biological Sciences Research Council; National Institute of Health Research; Medical Research Council; Wellcome Trust to the Cambridge Institute for Medical Research; Wellcome Trust–MRC Cambridge Stem Cell Institute; Netherlands Bioinformatics Centre [Biorange project BR1.3 to P.B.]; VU University Amsterdam

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