- Unique identifier:
- Restrictions to use:
- Academic or non-commercial use
- Output data:
- The output consists of MSAs with highlighted TFBSs, accessible online for consultation or downloadable in FASTA, JALVIEW, MSF, RTF or XML format for further processing.
- Web user interface, Application programming interface
- Input data:
- The user needs to provide the following data: (i) the chromosomal coordinates or DNA sequence of the region of interest, (ii) a name for this region, (iii) the strand information, (iv) the genome build, (v) the TF binding motifs of interest and (vi) the species that will be compared.
- Computer skills:
- Nicola Bonzanni <>
No open topic.
(Lelieveld et al., 2016)
ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.
Nucleic Acids Res.
PMID: 26721389 DOI: 10.1093/nar/gkv1518
Centre for Integrative Bioinformatics VU, VU University Amsterdam, Amsterdam, Netherlands; Department of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands; Department of Haematology, Wellcome Trust-MRC Cambridge Stem Cell Institute & Cambridge Institute for Medical Research, Cambridge University, Cambridge, UK; Klinik für Hämatologie, Universitätsklinik Essen, Germany; Computational Cancer Biology Group, Division of Molecular Carcinogenesis, Netherlands Cancer Institute, Amsterdam, Netherlands; ENPICOM, Eindhoven, Netherlands
Bloodwise; Wellcome Trust; Cancer Research UK; Biotechnology and Biological Sciences Research Council; National Institute of Health Research; Medical Research Council; Wellcome Trust to the Cambridge Institute for Medical Research; Wellcome Trust–MRC Cambridge Stem Cell Institute; Netherlands Bioinformatics Centre [Biorange project BR1.3 to P.B.]; VU University Amsterdam
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