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Conda specifications

Information


Unique identifier OMICS_20138
Name Conda
Alternative name miniconda
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Additional information


A version with conda and Python is avalaible as minicoda : https://conda.io/miniconda.html

Conda citations

 (166)
library_books

Ceftazidime Is the Key Diversification and Selection Driver of VIM Type Carbapenemases

2018
MBio
PMCID: 5941070
PMID: 29739906
DOI: 10.1128/mBio.02109-17

[…] pathways (mutd, muts, and mutt) (agilent technologies, santa clara, ca)., eleven independent colonies each of e. coli xl1-red harboring the blavim genes were inoculated into 2 ml of luria broth (conda laboratories, madrid, spain) containing 50 µg/ml of kanamycin and 250 µg/ml of cloxacillin to inhibit the e. coli ampc and were submitted to serial passages with different antibiotics […]

library_books

Genomic Organization and Expression of Iron Metabolism Genes in the Emerging Pathogenic Mold Scedosporium apiospermum

2018
Front Microbiol
PMCID: 5932178
PMID: 29755443
DOI: 10.3389/fmicb.2018.00827

[…] apiospermum; taxid:563466) whole-genome sequenced strain ihem 14462, originally isolated from a sputum sample from a cystic fibrosis patient (vandeputte et al., ), was grown on potato dextrose agar (conda, madrid, spain) plates at 37°c for 9 days to induce sporulation. conidia were harvested from colonies by aseptically scraping the plates using 1x te buffer (10 mm […]

library_books

SHI7 Is a Self Learning Pipeline for Multipurpose Short Read DNA Quality Control

2018
mSystems
PMCID: 5915699
PMID: 29719872
DOI: 10.1128/mSystems.00202-17

[…] under a highly simplified interface. the primary contribution of our qc pipeline, shi7 (pronounced “shizen”), is its ease of use. specifically, shi7 is trivial to install (either systematically with conda, or as a portable standalone package with all dependencies included), easy to run from the command line, and features a learning module that makes data-driven predictions for various qc […]

library_books

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

2018
mSystems
PMCID: 5904434
PMID: 29719869
DOI: 10.1128/mSystems.00021-18

[…] qiime2 plugin for sepp for seamless integration into existing analysis pipelines for use either in hpc environments or in environments with stand-alone workstations and laptops. this plugin is conda installable with a single command. execution time scales with the number of fragment sequences to be inserted into the reference tree (see ). memory requirement is dominated by the second phase […]

library_books

A taxonomic study of Costa Rican Leptodrepana with the description of twenty four new species (Hymenoptera, Braconidae, Cheloninae)

2018
Zookeys
PMCID: 5913189
PMID: 29692645
DOI: 10.3897/zookeys.750.23536

[…] none were named from costa rica. in this paper twenty-four new species are described and named from costa rica: l. alexisae dadelahi & shaw, sp. n., l. atalanta dadelahi & shaw, sp. n., l. conda dadelahi & shaw, sp. n., l. conleyae dadelahi & shaw, sp. n., l. demeter dadelahi & shaw, sp. n., l. eckerti dadelahi & shaw, sp. n., l. gauldilox dadelahi & shaw, sp. n., […]

library_books

Opportunities and obstacles for deep learning in biology and medicine

2018
PMCID: 5938574
PMID: 29618526
DOI: 10.1098/rsif.2017.0387

[…] the github repository. as a result, the latest manuscript version is always available at https://greenelab.github.io/deep-review. to ensure a consistent software environment, we defined a versioned conda environment of the software dependencies., in addition, we instructed the travis ci deployment script to perform blockchain timestamping [,]. using opentimestamps, we submitted hashes […]


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