CONDOP specifications

Information


Unique identifier OMICS_12232
Name CONDOP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data CONDOP requires four data inputs, namely i) GFF file (.gff) - representing gene/feature annotations, (ii) DOOR file (.opr) - containing non condition-dependent operon annotations retrieved from the DOOR database, iii) the genome sequence of the target organism (.fasta) and, iv), a raw count table extracted from a specific RNA-seq transcriptome profile.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
stats, plyr, IRanges, GenomicRanges, utils, S4Vectors, GenomeInfoDb, mclust, seqinr, R(≥3.0.1), randomforest, earth, rminer
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Vittorio Fortino <>

Publication for CONDOP

CONDOP institution(s)
Unit of Systems Toxicology, Finnish Institute of Occupational Health, Helsinki, Finland; NeuRoNe Lab, DISA-MIS, University of Salerno, Fisciano, Italy
CONDOP funding source(s)
This work has been supported by the European Commission, under grant agreement FP7-309329 (NANOSOLUTIONS) and by the Academy of Finland, under grant agreements 275151 and 292307.

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