CONDOP specifications

Unique identifier:
OMICS_12232
Interface:
Command line interface
Input data:
CONDOP requires four data inputs, namely i) GFF file (.gff) - representing gene/feature annotations, (ii) DOOR file (.opr) - containing non condition-dependent operon annotations retrieved from the DOOR database, iii) the genome sequence of the target organism (.fasta) and, iv), a raw count table extracted from a specific RNA-seq transcriptome profile.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.0
Maintained:
Yes

versioning

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CONDOP support

Documentation

Maintainer

  • Vittorio Fortino <>

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Publications

Institution(s)

Unit of Systems Toxicology, Finnish Institute of Occupational Health, Helsinki, Finland; NeuRoNe Lab, DISA-MIS, University of Salerno, Fisciano, Italy

Funding source(s)

This work has been supported by the European Commission, under grant agreement FP7-309329 (NANOSOLUTIONS) and by the Academy of Finland, under grant agreements 275151 and 292307.

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