CoNet pipeline

CoNet specifications

Information


Unique identifier OMICS_16020
Name CoNet
Alternative name Co-occurrence Network
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 3.0
Stability Beta
Requirements Cytoscape
Maintained Yes

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Documentation


Maintainer


  • person_outline Karoline Faust <>

Information


Unique identifier OMICS_16020
Name CoNet
Alternative name Co-occurrence Network
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable

Versioning


Add your version

Documentation


Maintainer


This tool is not maintained anymore.

Publication for Co-occurrence Network

CoNet citation

2016
PMCID: 5047636

[…] for the significantly different parameters using stamp [46]. pearson correlations (p < 0.05) between serum parameters and the relative abundance of otus in treatments were calculated using conet [47] and visualized using cytoscape 3.1.1 [48]., the drinking water was refreshed every day and live bacterial cells were kept between 108 to 109 cells per ml for bacteria administration […]

CoNet funding source(s)
This work was supported in part by NIH CA139193, NIH U54HG004969, the Crohn’s and Colitis Foundation of America, and the Juvenile Diabetes Research Foundation, NSF DBI-1053486, ARO W911NF-11-1-0473, NIH 1R01HG005969 and the Research Foundation - Flanders.

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