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ConEVA specifications

Information


Unique identifier OMICS_14072
Name ConEVA
Alternative name Protein Contact Evaluation
Interface Web user interface
Restrictions to use None
Input data Residue-residue contacts, native structure
Input format CASP RR, PDB
Output data Sequence length of contacts file and native structure with a link to the sequence comparison
Output format VACon
Programming languages Javascript, Perl, PHP, Python
License GNU General Public License version 2.0
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_14072
Name ConEVA
Alternative name Protein Contact Evaluation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript, Perl, PHP, Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Requirements
R
Maintained No

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Publication for Protein Contact Evaluation

ConEVA citations

 (3)
library_books

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype

2018
PMCID: 5861201
PMID: 29593772
DOI: 10.3389/fpls.2018.00322

[…] by: verĂ³nica s. di stilio, university of washington, united states, reviewed by: ping lou, dartmouth college, united states; keisuke nagai, nagoya university, japan, †present address: viktoriya coneva, kenyon college, department of biology, gambier, oh, united states; daniel h. chitwood, department of horticulture, department of computational mathematics, science and engineering, michigan […]

library_books

Bamboo Flowering from the Perspective of Comparative Genomics and Transcriptomics

2016
PMCID: 5156695
PMID: 28018419
DOI: 10.3389/fpls.2016.01900

[…] model plants from dicotyledonous (arabidopsis, antirrhinum) and monocotyledonous (oryza) groups to identify and characterize important floral pathway genes (putterill et al., ; colasanti and coneva, ). however, the majority of commercially important plants are perennial and there remains a gap in translating knowledge gained from annual, model plants to perennial plants. therefore, […]

library_books

Comparative Proteomic Analysis of the Response of Maize (Zea mays L.) Leaves to Long Photoperiod Condition

2016
PMCID: 4889979
PMID: 27313588
DOI: 10.3389/fpls.2016.00752

[…] do not flower or show delayed flowering (betran et al., ). plants integrate signals from endogenous regulatory pathways or the environment to modulate the timing of flowering (colasanti and coneva, ). in the model plant arabidopsis thaliana, numerous components associated with the plant circadian clock and photoperiod have been studied to understand the regulation and molecular […]


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ConEVA institution(s)
Department of Computer Science, University of Missouri, Columbia, MO, USA; Informatics Institute, University of Missouri, Columbia, MO, USA; Bond Life Science Center, University of Missouri, Columbia, MO, USA
ConEVA funding source(s)
This work has been supported by the US National Institutes of Health (grant No. R01GM093123).

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