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CongrPE

Uses for Next-Generation Sequencing (NGS) technology. CongrPE is a de novo assembly algorithm which was based on Contig growing of Paired-End Read mechanism. The assembly included four step: pre-process, seed contig generation, seed contig growing and scaffold. Current congrPE is a draft version without parameter setting except insert size. The result contigs are import in file result.fa and the output of programme gives the N50 result.

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CongrPE classification

CongrPE specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

CongrPE distribution

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