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Conn specifications


Unique identifier OMICS_10621
Name Conn
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Susan Whitfield-Gabrieli

Publication for Conn

Conn citations


Associations Between Daily Mood States and Brain Gray Matter Volume, Resting State Functional Connectivity and Task Based Activity in Healthy Adults

Front Hum Neurosci
PMCID: 5938366
PMID: 29765312
DOI: 10.3389/fnhum.2018.00168

[…] er-wise family-wise error (FWE)-correction for multiple comparisons () threshold set at p < 0.05, and corrected for smoothness non-uniformity (). All peak coordinates are reported in MNI format.Using CONN functional connectivity toolbox (version 16.b) pipeline () and based on SPM12 preprocessing, resting-state functional images were spatially realigned to correct for interscan movement and normali […]


Impulsivity in Parkinson’s Disease Is Associated With Alterations in Affective and Sensorimotor Striatal Networks

PMCID: 5932175
PMID: 29755401
DOI: 10.3389/fneur.2018.00279

[…] We used the CONN toolbox [version 16.a ()] with default settings () to perform our rs-fcMRI analyses. Residual head motion realignment parameters and motion outliers as determined during preprocessing by the ART […]


Schizophrenia alters intra network functional connectivity in the caudate for detecting speech under informational speech masking conditions

PMCID: 5885301
PMID: 29618332
DOI: 10.1186/s12888-018-1675-1

[…] All fMRI data were processed and analyzed using the functional connectivity toolbox v17 (CONN, []. The pre-processing pipeline included participant motion estimation and correction, structural segmentation and normalization (re-sampling to a voxel siz […]


Altered Gray Matter Volume and Resting State Connectivity in Individuals With Internet Gaming Disorder: A Voxel Based Morphometry and Resting State Functional Magnetic Resonance Imaging Study

PMCID: 5881242
PMID: 29636704
DOI: 10.3389/fpsyt.2018.00077

[…] Functional connectivity analysis was performed using the CONN functional connectivity toolbox v.15 [; cited in Whitfield-Gabrieli et al. ()] to identify resting-state properties in structurally altered brain regions. Restin […]


A New Measure for Neural Compensation Is Positively Correlated With Working Memory and Gait Speed

PMCID: 5868123
PMID: 29615893
DOI: 10.3389/fnagi.2018.00071

[…] The fMRI data was preprocessed using CONN software 17.a (Whitfield-Gabrieli and Nieto-Castanon, ) based on SPM8 Toolbox. The pre-processing steps included realignment, slice-timing correction, registration of functional images to structu […]


Multivariate Pattern Classification of Facial Expressions Based on Large Scale Functional Connectivity

Front Hum Neurosci
PMCID: 5868121
PMID: 29615882
DOI: 10.3389/fnhum.2018.00094

[…] Estimation of the task-related whole-brain FC was carried out using the CONN toolbox () in MATLAB. For each participant, the normalized anatomical volume and the preprocessed functional data were submitted to CONN. We employed the Harvard-Oxford atlas (FSL, Oxford Univers […]


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Conn institution(s)
Department of Brain and Cognitive Sciences, Martinos Imaging Center at McGovern Institute for Brain Research, and Poitras Center for Affective Disorders Research, Massachusetts Institute of Technology, Cambridge, MA, USA

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