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Conn specifications


Unique identifier OMICS_10621
Name Conn
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Susan Whitfield-Gabrieli <>

Publication for Conn

Conn citations


Associations Between Daily Mood States and Brain Gray Matter Volume, Resting State Functional Connectivity and Task Based Activity in Healthy Adults

PMCID: 5938366
PMID: 29765312
DOI: 10.3389/fnhum.2018.00168

[…] family-wise error (fwe)-correction for multiple comparisons () threshold set at p < 0.05, and corrected for smoothness non-uniformity (). all peak coordinates are reported in mni format., using conn functional connectivity toolbox (version 16.b) pipeline () and based on spm12 preprocessing, resting-state functional images were spatially realigned to correct for interscan movement […]


Impulsivity in Parkinson’s Disease Is Associated With Alterations in Affective and Sensorimotor Striatal Networks

PMCID: 5932175
PMID: 29755401
DOI: 10.3389/fneur.2018.00279

[…] vs. 60/40) and loss (2; $10 vs. $0) as within-subject variables. shapiro–wilk tests confirmed that the data of both measures were normally distributed in each group (p’s > 0.11)., we used the conn toolbox [version 16.a ()] with default settings () to perform our rs-fcmri analyses. residual head motion realignment parameters and motion outliers as determined during preprocessing by the art […]


A New Measure for Neural Compensation Is Positively Correlated With Working Memory and Gait Speed

PMCID: 5868123
PMID: 29615893
DOI: 10.3389/fnagi.2018.00071

[…] the whole-brain gray matter (gm) volumes, total intracranial volumes and white matter hyper-intensity (wmh) volumes were also measured for cr calculation., the fmri data was preprocessed using conn software 17.a (whitfield-gabrieli and nieto-castanon, ) based on spm8 toolbox. the pre-processing steps included realignment, slice-timing correction, registration of functional images […]


Multivariate Pattern Classification of Facial Expressions Based on Large Scale Functional Connectivity

PMCID: 5868121
PMID: 29615882
DOI: 10.3389/fnhum.2018.00094

[…] × 3 mm × 3 mm. finally, the functional data were spatially smoothed with a 4-mm full-width at half-maximum gaussian kernel., estimation of the task-related whole-brain fc was carried out using the conn toolbox () in matlab. for each participant, the normalized anatomical volume and the preprocessed functional data were submitted to conn. we employed the harvard-oxford atlas (fsl, oxford […]


Altered network hub connectivity after acute LSD administration

PMCID: 5857492
PMID: 29560311
DOI: 10.1016/j.nicl.2018.03.005

[…] threshold of p < 0.05 (fwe) was adjusted (bonferroni correction), resulting in a threshold of p < 0.005 (fwe)., analysis of fc between rsns and seed-to-voxel analysis were performed using the conn functional connectivity toolbox 17a ( (). unthresholded maps of rsns obtained from ica analysis were imported as rois and the weighted sums of the time series […]


Enhanced temporal variability of amygdala frontal functional connectivity in patients with schizophrenia

PMCID: 5857898
PMID: 29560309
DOI: 10.1016/j.nicl.2018.02.025

[…] amygdala rois were determined using stereotaxic, probabilistic maps of cytoarchitectonic boundaries ().fig. 1fig. 1, voxel-wise seed-based functional connectivity analyses were performed using the conn toolbox ( ()). static functional connectivity was also performed to provide complementary information. fisher's z-transformed pearson's correlation […]

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Conn institution(s)
Department of Brain and Cognitive Sciences, Martinos Imaging Center at McGovern Institute for Brain Research, and Poitras Center for Affective Disorders Research, Massachusetts Institute of Technology, Cambridge, MA, USA

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