Connectome Mapping Toolkit statistics

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Connectome Mapping Toolkit specifications

Information


Unique identifier OMICS_10609
Name Connectome Mapping Toolkit
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability No
Maintained Yes

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  • person_outline Connectome Mapping Toolkit <>

Publication for Connectome Mapping Toolkit

Connectome Mapping Toolkit in publications

 (22)
PMCID: 5802783
PMID: 29410486
DOI: 10.1038/s41598-018-20123-8

[…] was performed until 100,000 streamlines were reconstructed for each individual., anatomical scans were segmented using freesurfer and parcellated according to the lausanne 2008 atlas included in the connectome mapping toolkit. a parcellation scheme including 234 regions was registered to the b0 volume from each subject’s dsi data. the b0 to mni voxel mapping produced via qsdr was used to map […]

PMCID: 5783945
PMID: 29367627
DOI: 10.1038/s41467-017-02681-z

[…] using a modified fact algorithm was performed until 1,000,000 streamlines were reconstructed for each individual., anatomical scans were segmented using freesurfer59 and parcellated using the connectome mapping toolkit. a parcellation scheme including n = 128 regions was registered to the b0 volume from each subject’s dsi data. the b0 to mni voxel mapping was used to map region labels […]

PMCID: 5769855
PMID: 29143250
DOI: 10.1007/s10827-017-0672-6

[…] fov = 256 mm; slice thickness = 0.89 mm, matrix = 256 × 256. anatomical scans were segmented using freesurfer (dale et al. ) and parcellated according to the lausanne 2008 atlas included in the connectome mapping toolkit (hagmann et al. ). a parcellation scheme including 83 regions was registered to the b0 volume from each subject’s dsi data. the b0 to mni voxel mapping produced via qsdr […]

PMCID: 5638949
PMID: 29026142
DOI: 10.1038/s41598-017-13400-5

[…] maximum b-value 8,000 s/mm 2, and 2.2 × 2.2 × 3.0 mm voxel size. epi sequence was 3.3-mm in-plane resolution and 3.3-mm slice thickness with tr 1,920 ms. dsi and mprage data were processed using the connectome mapping toolkit. each participant’s gray and white matter compartments were segmented from the mprage volume. the gray matter volume was subdivided into 68 cortical and 15 subcortical […]

PMCID: 5435226
PMID: 28545040
DOI: 10.1371/journal.pone.0177466

[…] toolkit [], with the gradient table updated for the rigid-body registration performed earlier. whole brain tractography was performed using the deterministic streamline algorithm implemented in the connectome mapping toolkit [,] and using standard parameters. 32 streamlines were initiated in each wm voxel and propagated along the two opposite directions given by the local tensor orientation. […]


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Connectome Mapping Toolkit institution(s)
Signal Processing Laboratory 5, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland; Department of Radiology, University Hospital Center and University of Lausanne, Lausanne, Switzerland

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