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ConPred specifications

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Unique identifier OMICS_07258
Name ConPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.0
Stability No
Maintained No

Publications for ConPred

ConPred citations

 (17)
library_books

Predicting the Coupling Specificity of G protein Coupled Receptors to G proteins by Support Vector Machines

2016
PMCID: 5173181
PMID: 16689694
DOI: 10.1016/S1672-0229(05)03035-4

[…] of the full-length sequences of gpcrs with that only based on the intracellular part as adopted by other researches, we predicted the transmembrane helices of these gpcrs with the programs conpred ii and hmmtop 2.0 , then extracted the intracellular sequences and converted them into fixed-length feature vectors with the same method. the prediction results with k = 2 and k = 3 […]

library_books

Structure Prediction of Membrane Proteins

2016
PMCID: 5172438
PMID: 15629037
DOI: 10.1016/S1672-0229(04)02001-7

[…] of the original algorithm locating tm segments in queries is preserved (sensitivity of ~95% among documented proteins with helical tm regions). in 2003, xia and colleagues presented a new approach, conpred_elite , that can predict the whole topology with accuracies of 98% for prokaryotic and 95% for eukaryotic proteins as they reported., besides the tm helix, another tm segments type […]

library_books

Vaccination of Sheep with a Methanogen Protein Provides Insight into Levels of Antibody in Saliva Needed to Target Ruminal Methanogens

2016
PLoS One
PMCID: 4966943
PMID: 27472482
DOI: 10.1371/journal.pone.0159861

[…] for all procedures involving animals., recombinant gt2 (rgt2) was produced as the large extracellular domain (animo acids 23–247) from methanobrevibacter ruminantium m1 (mru_2175) predicted using conpred ii. the dna coding for the extracellular domain was synthesized (geneart; life technologies, usa) using escherichia coli codon preference and subcloned into pet-32a (novagen, usa) to create […]

library_books

The Signature Sequence Region of the Human Drug Transporter Organic Anion Transporting Polypeptide 1B1 Is Important for Protein Surface Expression

2014
PMCID: 4209838
PMID: 25371825
DOI: 10.1155/2014/129849

[…] the topology of oatp1b1 was predicted using the online prediction programs topcons [], phobius [], tmpred [], toppred ii [], membrain [], phdhtm [], split 4.0 [], philius [], hmmtop [], svmtm [], conpred ii [], sosui [], tmhmm [], tseg [], pred-tmr [], and memsat3 []. a homology model was generated using the protein homology/analogy recognition engine v 2.0 (phyre2) [], which modeled […]

library_books

Comparative analysis of the repertoire of G protein coupled receptors of three species of the fungal genus Trichoderma

2013
BMC Microbiol
PMCID: 3664084
PMID: 23679152
DOI: 10.1186/1471-2180-13-108

[…] sensitive database searching using hidden markov models (hmm) was performed using the program hmmer (http://hmmer.janelia.org/) []., all obtained predicted proteins were analyzed with the tmhmm, conpred ii and hmmtop algorithms [-] to test for the typical 7-transmembrane domain topology. for those few proteins exhibiting less than seven transmembrane domains, the respective encoding gene […]

library_books

Mycobacterium tuberculosis DosR Regulon Gene Rv0079 Encodes a Putative, ‘Dormancy Associated Translation Inhibitor (DATIN)’

2012
PLoS One
PMCID: 3374827
PMID: 22719925
DOI: 10.1371/journal.pone.0038709

[…] separated by electrophoresis in 1% agarose gel and visualized under uv light., in silico sequence analysis and computational modelling of datin () was performed using different tools such as das , conpred ii , topcons , and psortb v3.0 to specifically analyze for the hydropathy index, membrane topology and surface probability. amino acid sequences of datin were submitted for 3-dimensional […]


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ConPred institution(s)
Department of Electronic and Information System Engineering, Faculty of Science and Technology, Hirosaki University, Hirosaki, Japan

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