Consan pipeline
Consan specifications
Information
| Unique identifier | OMICS_11353 |
|---|---|
| Name | Consan |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | C |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.2 |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Maintainer
- person_outline Robin Dowell <>
Publication for Consan
library_books
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
2006 BMC Bioinformatics
PMID: 16952317
DOI: 10.1186/1471-2105-7-400
Consan citation
library_books
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
2007
PMCID: 1868766
[…] [35] were also compared against three other dynamic programming algorithms. the three other programs are foldalign [33], which uses a free energy-based scoring function, and stemloc [11] and consan [34], which use scfg models. each program was run using default parameters. our interest is both in the accuracy of the methods and in their use of resources, cpu time and memory., tables 6 […]
Consan institution(s)
Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St Louis, MO, USA; MIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA, USA
Consan reviews
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