Consan pipeline

Consan specifications


Unique identifier OMICS_11353
Name Consan
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes


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  • person_outline Robin Dowell <>

Publication for Consan

Consan citation

PMCID: 1868766

[…] [35] were also compared against three other dynamic programming algorithms. the three other programs are foldalign [33], which uses a free energy-based scoring function, and stemloc [11] and consan [34], which use scfg models. each program was run using default parameters. our interest is both in the accuracy of the methods and in their use of resources, cpu time and memory., tables 6 […]

Consan institution(s)
Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St Louis, MO, USA; MIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA, USA

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