Consan specifications


Unique identifier OMICS_11353
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes


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  • person_outline Robin Dowell <>

Consan article

Consan citation

PMCID: 1868766

[…] subset of the free energy nearest neighbor parameters [33]. the revised foldalign restricts the alignment space to reduce runtime. two scfg-based programs are available, stemloc package [11,12] and consan [34]. to reduce runtime, stemloc introduced the concept of fold and alignment envelopes that restrict, respectively, the search space for possible base pairs and possible nucleotide […]

Consan institution(s)
Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St Louis, MO, USA; MIT Computer Science and Artificial Intelligence Laboratory, Cambridge, MA, USA

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