Consed protocols

Consed specifications

Information


Unique identifier OMICS_00879
Name Consed
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Medium
Version 29.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Consed

Versioning


Add your version

Maintainer


  • person_outline David Gordon <>

Publications for Consed

Consed IN pipelines

 (4)
2015
PMCID: 4447923
PMID: 26021938
DOI: 10.1128/genomeA.00572-15

[…] mate pair sample preparation kit according to the gel-plus protocol and including a size selection of 500-bp inserts. the gap closure and finishing steps of this genome project were supported by the consed finishing package (version 26) (11)., the chromosome of c.┬ácamporealensis dsm 44610 has a size of 2,451,810┬ábp with a mean g+c content of 59.41%. gene recognition was performed […]

2009
PMCID: 2760101
PMID: 19844571
DOI: 10.1371/journal.pone.0007534

[…] for 10 min). the pcr products were sequenced with bigdye v3.1 (applied biosystems) according to the manufacturer's instructions and the sequences were aligned with phredphrap program and read in consed39 [45] (http://bozeman.mbt.washington.edu/consed/consed.html#documentation)., all new polymorphism identified have been deposited in dbsnp (http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp, […]

2009
PMCID: 2760101
PMID: 19844571
DOI: 10.1371/journal.pone.0007534

[…] with bigdye v3.1 (applied biosystems) according to the manufacturer's instructions and the sequences were aligned with phredphrap program and read in consed39 [45] (http://bozeman.mbt.washington.edu/consed/consed.html#documentation)., all new polymorphism identified have been deposited in dbsnp (http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp, build 130) under the following ids: rs61949282, […]

2009
PMCID: 2760101
PMID: 19844571
DOI: 10.1371/journal.pone.0007534

[…] v3.1 (applied biosystems) according to the manufacturer's instructions and the sequences were aligned with phredphrap program and read in consed39 [45] (http://bozeman.mbt.washington.edu/consed/consed.html#documentation)., all new polymorphism identified have been deposited in dbsnp (http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp, build 130) under the following ids: rs61949282, rs61949292, […]

Consed institution(s)
Department of Molecular Biotechnology, University of Washington, Seattle, WA, USA

Consed reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Consed