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Consed | Viewing and editing assembled sequences

A program for viewing and editing assemblies prepared by the Phrap assembly program. To allow full-feature editing of large datasets while keeping memory requirements low, we developed a viewer, bamScape, that reads billion-read BAM files, identifies and displays problem areas for user review and launches the consed graphical editor on user-selected regions, allowing, in addition to longstanding consed capabilities such as assembly editing, a variety of new features including direct editing of the reference sequence, variant and error detection, display of annotation tracks and the ability to simultaneously process a group of reads.

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Consed forum

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Consed classification

Consed specifications

Unique identifier:
OMICS_00879
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS
Computer skills:
Medium
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++
Version:
29.0
Maintained:
Yes

Consed distribution

versioning

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No versioning.

Consed support

Maintainer

  • David Gordon <>

Credits

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Publications

Institution(s)

Department of Molecular Biotechnology, University of Washington, Seattle, WA, USA

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