Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

CODEHOP | For amplification of distantly related sequences

Online

Designs PCR (Polymerase Chain Reaction) primers from protein multiple-sequence alignments. CODEHOP is suited for cases where the protein sequences are distant from each other and degenerate primers are needed. Isolation of members of a rapidly evolving family of novel cytosine methyltransferase homologs from diverse plants demonstrated his practical utility.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

CODEHOP forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

CODEHOP classification

CODEHOP specifications

Unique identifier:
OMICS_02339
Alternative names:
iCODEHOP, j-CODEHOP
Restrictions to use:
None
Input format:
Blocks Database format, Bock Maker output.
Stability:
Stable
Name:
COnsensus-DEgenerate Hybrid Oligonucleotide Primers
Interface:
Web user interface
Input data:
A set of local multiple alignments (blocks) of a group of related protein sequences.
Computer skills:
Basic
Maintained:
No

CODEHOP support

Documentation

Maintainer

This tool is not maintained anymore.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Center for Childhood Infection and Prematurity Research, Seattle Children’s Research Institute, Seattle, WA, USA; Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA; Northwest Association for Biomedical Research, Seattle, WA, USA; Department of Pediatrics, University of Washington, Seattle, WA, USA

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.