CoVaCS specifications

Unique identifier:
OMICS_27756
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Computer skills:
Basic
Registration required:
Yes
Name:
Consensus Variant Calling System
Interface:
Web user interface
Input format:
FASTQ,BAM/SAM,SRA,ZIP,GZ,TAR
Stability:
Stable
Maintained:
Yes

CoVaCS support

Maintainer

  • Graziano Pesole <>

Additional information

https://bioinformatics.cineca.it/covacs/help.php

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Publications

Institution(s)

Dipartimento di Bioscienze, Università degli Studi di Milano, Milan, Italy; SCAI, Cineca, Consorzio Interuniversitario di Supercalcolo, Rome, Italy; Istituto di Biomembrane Bioenergetica e Biotecnologie Molecolari, Consiglio Nazionale delle Ricerche, Bari, Italy; Dipartimento di Bioscienze, Biotecnologie e Biofarmaceutica, Università degli Studi di Bari “A. Moro”, Bari, Italy

Funding source(s)

Supported by: MIUR and CNR, Italy (EPIGEN Project); EU H2020 (ELIXIR-EXCELERATE project); Regione Puglia, “Aiuti a Sostegno dei Cluster Tecnologici Regionali” (Project MTJU9H8: DICLIMAX: Strumentazione per diagnostica clinica basata su Next Generation sequencing di acidi nucleici); and by the Italian Ministry of Health, Bando di Ricerca Finalizzata e Giovani Ricercatori (GR-2011-02347129, “Next-generation sequencing to study the penetrance of dominantly inherited porphyrias.”).

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