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ConsensusCore specifications

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Unique identifier OMICS_19898
Name ConsensusCore
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version 1.0.0
Stability Stable
Source code URL https://codeload.github.com/PacificBiosciences/ConsensusCore/tar.gz/1.0.0
Maintained Yes

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  • person_outline Pacific Biosciences

ConsensusCore citations

 (2)
library_books

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

2017
BMC Genomics
PMCID: 5414186
PMID: 28464822
DOI: 10.1186/s12864-017-3723-5

[…] flag. next, cmph5tools.py (version 0.8.0) was used to merge and sort (with the ‘--deep’ flag) the pbalign.h5 output files for each smrt cell. finally, quiver (genomicconsensus version 0.9.2 and consensuscore version 0.8.8) was run on the merged and sorted pbalign output to produce an initial polished assembly., pilon [] (version 1.18) was run on the intermediate quiver-polished assembly […]

library_books

Single Molecule Sequencing of the Drosophila serrata Genome

2017
PMCID: 5345708
PMID: 28143951
DOI: 10.1534/g3.116.037598

[…] pacbio genome was assembled using the pbcr pipeline, which implements the mhap algorithm within the celera assembler (version 8.3rc2) (), and polished with quiver (genomicconsensus version 0.9.2 and consensuscore version: 0.8.8) () in three steps: (1) errors were corrected in reads using pbdagcon, which requires at least 50 × genome coverage and utilizes the consensus of oversampled sequences […]


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