ConStrains pipeline

ConStrains specifications


Unique identifier OMICS_11367
Name ConStrains
Alternative name Conspecific Strains
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements BioPython, Numpy, Scipy, NetworkX, Bowtie, Metaphlan
Maintained Yes


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  • person_outline Ramnik Xavier <>

Publication for Conspecific Strains

ConStrains institution(s)
Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA; Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, CO, USA; Howard Hughes Medical Institute, Boulder, CO, USA; Children’s Hospital, University of Helsinki and Helsinki University Hospital, Helsinki, Finland; Research Programs Unit, Diabetes and Obesity, University of Helsinki, Helsinki, Finland; Folkhälsan Research Center, Helsinki, Finland; Department of Pediatrics, Tampere University Hospital, Tampere, Finland; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA
ConStrains funding source(s)
This work was supported in part by the Crohn’s and Colitis Foundation of America, the Leona M. and Harry B. Helmsley Charitable Trust, US National Institutes of Health grants U54 DK102557 and R01 DK092405, the Howard Hughes Medical Institute and the Finnish Centre of Excellence in Molecular Systems Immunology and Physiology Research 2012-17 (Academy of Finland, Decision No. 250114).

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