ConSurf pipeline

ConSurf specifications

Information


Unique identifier OMICS_06939
Name ConSurf
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline QuasiMotiFinder <>

Publications for ConSurf

ConSurf IN pipelines

 (7)
2017
PMCID: 5533708
PMID: 28754924
DOI: 10.1038/s41598-017-05748-5

[…] for both models, with scores of 0.749 for tanc1 and 0.732 for tanc2. the tpr models were evaluated for both conservation and electrostatic properties (fig. 5 and supplementary figure s4). consurf revealed the presence of highly conserved regions in the tpr domains corresponding to the convex surfaces, with prevailing positively charged surfaces in both tanc proteins. […]

2016
PMCID: 5217690
PMID: 27881678
DOI: 10.1074/jbc.M116.758896

[…] groups. the alignment was subsequently mapped on the crystal structure of the trmd protein from hemophilus influenza (pdb code 1uak), a member of the γ-proteobacteria group and displayed in the consurf view (31). as expected, the three motifs, including the a1 motif, form the binding pocket for adomet on trmd. the a1 motif area appears as white patch in the consurf view, indicative […]

2016
PMCID: 5217690
PMID: 27881678
DOI: 10.1074/jbc.M116.758896

[…] group and displayed in the consurf view (31). as expected, the three motifs, including the a1 motif, form the binding pocket for adomet on trmd. the a1 motif area appears as white patch in the consurf view, indicative of a lower conservation (fig. 6b). to gain a better understanding of the location of the amino acids within the a1 motif in the context of the protein/adomet ligand […]

2016
PMCID: 5291231
PMID: 27466201
DOI: 10.1093/hmg/ddw236

[…] (enst00000356736), deemed as canonical, was chosen for further analysis. conservation analysis was performed on ensembl using 23 way alignment of high-coverage amniote vertebrate genomes. the consurf server was used to predict functional domains based on the evolutionary conservation of amino acid positions, with uniref protein clusters to infer the phylogenetic relations […]

2015
PMCID: 4616228
PMID: 26417906
DOI: 10.1021/acs.jafc.5b03534

[…] were prepared with pymol44 or chimera.45 pdbepisa was used to calculate the probability of quaternary structure.46 the dali server47 was used to identify structurally similar proteins. the consurf server was used to map sequence conservation on the structure of cor a 8.48, cor a 8 was separated from the prolamin fraction of hazelnut extract by using ion exchange chromatography […]

ConSurf institution(s)
Department of Cell Research and Immunology, George S Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel

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