ContaMiner specifications

Information


Unique identifier OMICS_14484
Name ContaMiner
Interface Web user interface
Restrictions to use None
Input data The (merged and scaled) diffraction data file
Input format CIF, MTZ
Output data Summarizes the MoRDa scores from all MR trials, and infers the likelihood of each individual contaminant being a solution.
Programming languages Shell (Bash)
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Source code URL https://codeload.github.com/StruBE-KAUST/ContaMiner/zip/master
Maintained Yes

Maintainer


  • person_outline Stefan Arold <>

Information


Unique identifier OMICS_14484
Name ContaMiner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The (merged and scaled) diffraction data file
Input format CIF, MTZ
Output data Summarizes the MoRDa scores from all MR trials, and infers the likelihood of each individual contaminant being a solution.
Operating system Unix/Linux
Programming languages Shell (Bash)
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/StruBE-KAUST/ContaMiner/zip/master
Maintained Yes

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Maintainer


  • person_outline Stefan Arold <>

Publication for ContaMiner

ContaMiner in publications

 (4)
PMCID: 5821490
PMID: 29492455
DOI: 10.1126/sciadv.aao1261

[…] collected from one crystal cryoprotected with 30% glycerol on the id29 beam line at the european synchrotron radiation facility in grenoble, france. data were analyzed for protein contaminants using contaminer (). the crystal structure of the pdurar lbd–atra complex was determined by molecular replacement using morda (). morda placed four molecules in the asymmetric unit, forming two canonical […]

PMCID: 5418738
PMID: 27577872
DOI: 10.1093/hmg/ddw298

[…] crystal forms (,). it is therefore expedient for the protein crystallographer to be alert for false-positive crystallization hits from non-target proteins. notably, for the 4nl7 dataset the contaminer webserver () identifies hfq as the highest scoring molecular replacement template from its database of likely crystallization contaminants (). consequently, during the process of structure […]

PMCID: 5012770
PMID: 27642468
DOI: 10.11604/pamj.2016.24.130.6512

[…] présentait ni signes de désorganisation patents ni bizarrerie comportementale. son état émotionnel était dominé par la tristesse et l'angoisse générée par cette « infestation » et surtout la peur de contaminer les membres de sa famille, compte tenu de sa proche libération. la pensée du patient était globalement cohérente et demeurait centrée sur l'infestation. il décrivait avec détail les […]

PMCID: 4761245
PMID: 26955419
DOI: 10.11604/pamj.2015.22.230.7832

[…] avec un risque de contamination secondaire., dans notre cas, nous avions un double objectif: éviter la proximité du scarpadroit qui est infecté et éviter d'aborder le scarpagaucheafin de ne pas contaminer le pontage aorto-fémoral gauche qui est perméable. nous avions modifié alors le tunnel de telle sorte quele pontage passe le long du périnée au-dessous de la base du scrotum dans le tissu […]


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ContaMiner institution(s)
King Abdullah University of Science and Technology, Center for Computational Bioscience Research, Division of Biological and Environmental Sciences and Engineering, Thuwal, Saudi Arabia; Fachbereich Biologie, Universität Konstanz, Konstanz, Germany
ContaMiner funding source(s)
Supported by the King Abdullah University of Science and Technology through the baseline fund and the Office of Sponsored Research under award Nos. URF/1/1976-04 and URF/1/2602-01-01.

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