Context Fold statistics

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Context Fold specifications

Information


Unique identifier OMICS_03451
Name Context Fold
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Information


Unique identifier OMICS_03451
Name Context Fold
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for Context Fold

Context Fold in publications

 (3)
PMCID: 4227785
PMID: 25352551
DOI: 10.1093/nar/gku952

[…] ), the most widespread coverage of vsrna1 was derived from nt 105–133 of the ev71 5′utr, which is located within the double-stranded region of the predicted stem-loop ii structure, illustrated by context fold software () (figure ). to confirm whether vsrna1 was generated from nt 105–133 of the ev71 5′utr, we generated an ev71 replicon in which nt 105–133 of the ev71 5′utr were deleted […]

PMCID: 4199719
PMID: 25330175
DOI: 10.1371/journal.pone.0109835

[…] structures were solved using the mfold web server (http://mfold.rna.albany.edu/) using version 2.3 and adjusting folding temperature to 24°c, and vienna type rna structures were predicted with context fold (http://www.cs.bgu.ac.il/~negevcb/contextfold/)., coffea arabica (acc. no: bac43759.1), theobroma cacao (acc. no: bae79730.1), camellia sinensis (acc. no: abp98983.1) and ilex […]

PMCID: 3936766
PMID: 24253306
DOI: 10.1093/nar/gkt1174

[…] (parameter file dna_mathews1999.par from the viennarna package v2.1.2) (). gu and lonely pairs were disallowed in the secondary structures. graphical models of shown 50-mer dss were drawn using context fold ()., shuffled versions of the gene groups were also analysed as described earlier. the shuffled gene groups were generated by randomizing the nucleotide sequence of each gene, thus […]


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Context Fold institution(s)
Department of Computer Science, Ben-Gurion University of the Negev, Be'er Sheva, Israel
Context Fold funding source(s)
Funded by ISF grant 478/10.

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