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Infers regulatory interactions between transcription factors and their targets using a compendium of gene expression profiles. CLR demonstrates an average precision gain of 36% relative to the next-best performing algorithm. At a 60% true positive rate, CLR identifies 1,079 regulatory interactions, of which 338 were in the previously known network and 741 were novel predictions.

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CLR forum

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CLR classification

CLR specifications

Unique identifier:
OMICS_01682
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Computer skills:
Advanced
Maintained:
No
Name:
Context Likelihood of Relatedness
Interface:
Command line interface
Operating system:
Unix/Linux

CLR distribution

versioning

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No versioning.

CLR support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

Bioinformatics Program, Boston University, Boston, MA, USA

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