COPE-PCG specifications

Unique identifier:
OMICS_19388
Interface:
Web user interface
Programming languages:
Perl
Stability:
Stable
Name:
Context-Oriented Predictor for variant Effect - Protein-Coding Genes
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

Subtools

  • COPE

COPE-PCG specifications

Unique identifier:
OMICS_19388
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Requirements:
tabix, bedtools, Perl: Bio::DB::Fasta, Set::IntervalTree, Getopt::Long, Parallel::ForkManager
Name:
Context-Oriented Predictor for variant Effect - Protein-Coding Genes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
Academic Free License version 3.0
Stability:
Stable
Maintained:
Yes

Subtools

  • COPE

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COPE-PCG support

Maintainer

  • Ge Gao <>
  • Ge Gao <>

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Publications

Institution(s)

State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China

Funding source(s)

Supported by National Key Research and Development Program [2016YFC0901603]; China 863 Program [2015AA020108]; International Collaboration Program for Proteome Biological Big Data and Standard System [2014DFB30030]; State Key Laboratory of Protein and Plant Gene Research; and by the National Program for Support of Top-notch Young Professionals.

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