COPE-PCG specifications

Information


Unique identifier OMICS_19388
Name COPE-PCG
Alternative name Context-Oriented Predictor for variant Effect - Protein-Coding Genes
Interface Web user interface
Restrictions to use None
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • COPE

Maintainer


  • person_outline Ge Gao <>

Information


Unique identifier OMICS_19388
Name COPE-PCG
Alternative name Context-Oriented Predictor for variant Effect - Protein-Coding Genes
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License Academic Free License version 3.0
Computer skills Advanced
Stability Stable
Requirements tabix, bedtools, Perl: Bio::DB::Fasta, Set::IntervalTree, Getopt::Long, Parallel::ForkManager
Maintained Yes

Subtool


  • COPE

Versioning


Add your version

Maintainer


  • person_outline Ge Gao <>

COPE-PCG article

COPE-PCG institution(s)
State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China
COPE-PCG funding source(s)
Supported by National Key Research and Development Program [2016YFC0901603]; China 863 Program [2015AA020108]; International Collaboration Program for Proteome Biological Big Data and Standard System [2014DFB30030]; State Key Laboratory of Protein and Plant Gene Research; and by the National Program for Support of Top-notch Young Professionals.

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