contiBAIT statistics

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contiBAIT specifications

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Information

Unique identifier	OMICS_17887
Name	contiBAIT
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS, Windows
Programming languages	C++, R
License	BSD 2-clause “Simplified” License
Computer skills	Advanced
Version	1.8.0
Stability	Stable
Requirements	methods, gplots, IRanges, GenomicRanges, DNAcopy, S4Vectors, rtracklayer, BiocStyle, grDevices, GenomicAlignments, Rcpp, ggplot2, BiocParallel, gtools, data.table, cluster, reshape2, colorspace, GenomicFiles, clue, BH(>=1.51.0-3), TSP, exomeCopy, diagram, Rsamtools(>=1.21)
Maintained	Yes

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Documentation

Documentation: http://bioconductor.org/packages/release/bioc/manuals/contiBAIT/man/contiBAIT.pdf

Maintainer

Kieran O’Neill <>

Additional information

https://github.com/oneillkza/ContiBAIT

contiBAIT in publication

Assembling draft genomes using contiBAIT

PMCID: 5860061

PMID: 28475666

DOI: 10.1093/bioinformatics/btx281

[…] template strand inheritance in single cells, information that can be used to determine relative genomic distance and orientation between scaffolds, and find errors within them. we present contibait, an r/bioconductor package which uses strand-seq data to repair and improve existing assemblies., availability and implementation: contibait is available on bioconductor. source files […]

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