contiBAIT statistics
contiBAIT specifications
Information
Unique identifier | OMICS_17887 |
---|---|
Name | contiBAIT |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | C++, R |
License | BSD 2-clause “Simplified” License |
Computer skills | Advanced |
Version | 1.8.0 |
Stability | Stable |
Requirements |
methods, gplots, IRanges, GenomicRanges, DNAcopy, S4Vectors, rtracklayer, BiocStyle, grDevices, GenomicAlignments, Rcpp, ggplot2, BiocParallel, gtools, data.table, cluster, reshape2, colorspace, GenomicFiles, clue, BH(>=1.51.0-3), TSP, exomeCopy, diagram, Rsamtools(>=1.21)
|
Maintained | Yes |
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Documentation
Maintainer
- person_outline Kieran O’Neill <>
Additional information
https://github.com/oneillkza/ContiBAIT
contiBAIT in publication
library_books
Assembling draft genomes using contiBAIT
PMCID: 5860061
PMID: 28475666
DOI: 10.1093/bioinformatics/btx281
[…] template strand inheritance in single cells, information that can be used to determine relative genomic distance and orientation between scaffolds, and find errors within them. we present contibait, an r/bioconductor package which uses strand-seq data to repair and improve existing assemblies., availability and implementation: contibait is available on bioconductor. source files […]
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