contiBAIT statistics

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Popular tool citations

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Associated diseases

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contiBAIT specifications

Information


Unique identifier OMICS_17887
Name contiBAIT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License BSD 2-clause “Simplified” License
Computer skills Advanced
Version 1.8.0
Stability Stable
Requirements
methods, gplots, IRanges, GenomicRanges, DNAcopy, S4Vectors, rtracklayer, BiocStyle, grDevices, GenomicAlignments, Rcpp, ggplot2, BiocParallel, gtools, data.table, cluster, reshape2, colorspace, GenomicFiles, clue, BH(>=1.51.0-3), TSP, exomeCopy, diagram, Rsamtools(>=1.21)
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Kieran O’Neill <>

Additional information


https://github.com/oneillkza/ContiBAIT

contiBAIT in publication

PMCID: 5860061
PMID: 28475666
DOI: 10.1093/bioinformatics/btx281

[…] template strand inheritance in single cells, information that can be used to determine relative genomic distance and orientation between scaffolds, and find errors within them. we present contibait, an r/bioconductor package which uses strand-seq data to repair and improve existing assemblies., availability and implementation: contibait is available on bioconductor. source files […]


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