CONTRAfold protocols

CONTRAfold specifications

Information


Unique identifier OMICS_03452
Name CONTRAfold
Alternative name CONTRA-fold
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_03452
Name CONTRAfold
Alternative name CONTRA-fold
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CONTRAfold

CONTRAfold IN pipeline

2010
PMCID: 2828121
PMID: 20080511
DOI: 10.1093/bioinformatics/btq014

[…] it moves along the sequence. this presents a challenge for future research., our technique does not depend on the concrete information that is accumulated for each shape. recent approaches such as contrafold (do et al., 2006) and cg (andronescu et al., 2007) replace the classical thermodynamic model by stochastic models, trained from structural data via machine learning techniques. to benefit […]

CONTRAfold institution(s)
Computer Science Department, Stanford University, Stanford, CA, USA

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