cooccurNet specifications

Unique identifier:
OMICS_16098
Interface:
Command line interface
Input data:
The DNA, RNA, protein or SNP sequences.
Output data:
A co-occurrence network for each sequence, the inherent modules in each cooccurrence network and a number of basic network attributes (connectivity, the clustering coefficient), the extent of co-occurrence between residues.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://cran.r-project.org/src/contrib/cooccurNet_0.1.6.tar.gz
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
0.1.6
Requirements:
seqinr, igraph, bigmemory, Matrix, foreach, parallel, pryr, knitr, doParallel
Maintained:
Yes

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cooccurNet distribution

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cooccurNet support

Documentation

Maintainer

  • Yuanqiang Zou <>

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Publications

Funding source(s)

This work has been supported by the Chinese Academy of Medical Sciences (2016-I2M-1-005), the National Natural Science Foundation (31500126 and 31671371), National Key Plan for Scientific Research and Development of China (2016YFD0500300 and 2016YFC1200200) and the International Scientific and Technological Cooperation project of China (2014DFB30010).

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