cooccurNet specifications


Unique identifier OMICS_16098
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The DNA, RNA, protein or SNP sequences.
Input format FASTA
Output data A co-occurrence network for each sequence, the inherent modules in each cooccurrence network and a number of basic network attributes (connectivity, the clustering coefficient), the extent of co-occurrence between residues.
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.6
Stability Stable
Requirements seqinr, igraph, bigmemory, Matrix, foreach, parallel, pryr, knitr, doParallel
Source code URL
Maintained Yes



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  • person_outline Yuanqiang Zou <>

cooccurNet article

cooccurNet funding source(s)
This work has been supported by the Chinese Academy of Medical Sciences (2016-I2M-1-005), the National Natural Science Foundation (31500126 and 31671371), National Key Plan for Scientific Research and Development of China (2016YFD0500300 and 2016YFC1200200) and the International Scientific and Technological Cooperation project of China (2014DFB30010).

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