Cookiecutter specifications


Unique identifier OMICS_09649
Name Cookiecutter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Cookiecutter takes as input one or several FASTQ files or one or several pairs of FASTQ files and requires a file with a list of k-mers for filtering.
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements Make, gcc, Python
Maintained Yes


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  • person_outline Aleksey Komissarov <>

Cookiecutter article

Cookiecutter institution(s)
Bioinformatics Institute, St. Petersburg, Russia; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia; Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, Oceanographic Center, Nova Southeastern University Ft Lauderdale, Ft Lauderdale, FL, USA

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